Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00062 * 2 1 4 4 H 1.48495 * 109.47099 * 94.92977 * 3 2 1 5 5 H 1.48502 * 109.46984 * 214.92700 * 3 2 1 6 6 H 1.48500 * 109.47104 * 334.92483 * 3 2 1 7 7 C 1.37879 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99906 * 357.90478 * 7 2 1 9 9 C 1.50699 * 120.00016 * 177.91123 * 7 2 1 10 10 H 1.09002 * 109.57229 * 25.82725 * 9 7 2 11 11 C 1.53432 * 109.57238 * 265.44186 * 9 7 2 12 12 N 1.46919 * 107.79025 * 177.00884 * 11 9 7 13 13 C 1.39916 * 118.92924 * 44.67423 * 12 11 9 14 14 C 1.39095 * 119.12339 * 166.76639 * 13 12 11 15 15 C 1.38034 * 120.08798 * 179.61884 * 14 13 12 16 16 C 1.38272 * 119.93347 * 0.02562 * 15 14 13 17 17 C 1.38356 * 120.13536 * 0.04033 * 16 15 14 18 18 F 1.35098 * 119.87418 * 180.02562 * 17 16 15 19 19 C 1.38565 * 120.83529 * 346.47936 * 13 12 11 20 20 C 1.50590 * 121.51023 * 0.47419 * 19 13 12 21 21 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.79847 * 296.57833 * 11 9 7 23 23 H 1.09000 * 109.79504 * 57.43841 * 11 9 7 24 24 H 0.97007 * 120.53612 * 224.66974 * 12 11 9 25 25 H 1.08002 * 119.95743 * 359.58659 * 14 13 12 26 26 H 1.07995 * 120.03636 * 179.97438 * 15 14 13 27 27 H 1.07998 * 119.93479 * 180.02562 * 16 15 14 28 28 H 1.09007 * 109.30016 * 219.04085 * 20 19 13 29 29 H 1.08999 * 109.13476 * 99.56332 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6009 1.9862 1.3948 5 1 3.4908 1.4724 -0.8016 6 1 1.3985 2.6805 -0.5934 7 6 2.0046 -1.1941 0.0005 8 1 1.4651 -2.1291 0.0351 9 6 3.5108 -1.1946 -0.0470 10 1 3.8897 -0.2620 0.3713 11 6 3.9791 -1.3365 -1.5012 12 7 5.4463 -1.2599 -1.5099 13 6 6.1672 -1.9796 -0.5508 14 6 7.5392 -2.1396 -0.7146 15 6 8.2712 -2.8393 0.2235 16 6 7.6392 -3.3820 1.3271 17 6 6.2745 -3.2260 1.4926 18 9 5.6625 -3.7581 2.5731 19 6 5.5324 -2.5242 0.5539 20 6 4.0484 -2.3747 0.7620 21 1 -0.4849 0.8400 -0.0004 22 1 3.6574 -2.2984 -1.9005 23 1 3.5637 -0.5284 -2.1033 24 1 5.9077 -0.7191 -2.1699 25 1 8.0323 -1.7163 -1.5772 26 1 9.3363 -2.9633 0.0952 27 1 8.2120 -3.9291 2.0613 28 1 3.8482 -2.2069 1.8203 29 1 3.5487 -3.2888 0.4414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = -47.656080 kcal Electronic energy + Delta-G solvation = -14767.373716 eV Core-core repulsion = 12182.212117 eV Total energy + Delta-G solvation = -2585.161599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.81724 -40.76720 -37.47296 -35.03071 -33.74939 -31.61588 -30.21801 -27.09777 -25.59580 -23.55617 -23.06044 -20.45558 -19.24886 -18.86113 -17.52074 -16.65874 -16.50102 -16.34222 -16.19903 -15.65564 -15.02628 -14.70449 -14.52869 -14.04778 -13.90136 -13.61107 -12.96923 -12.76256 -12.71859 -12.44392 -11.92908 -11.75738 -11.46141 -11.23276 -10.84723 -10.68327 -9.48291 -8.34591 -8.33370 -6.39055 0.33668 0.59429 1.32221 1.34419 1.45084 2.30749 2.58219 2.80814 3.02775 3.49972 3.90201 4.02738 4.18325 4.28082 4.46011 4.55630 4.61234 4.74575 4.85439 4.91902 5.16409 5.31684 5.34505 5.39317 5.46113 5.53754 5.57590 5.94915 6.22884 6.38955 6.68613 7.00426 7.27134 8.83234 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.009267 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.319841 B = 3020.880213 C = 3394.661892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.241 1.241 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.034 0.966 9 C 0.006 3.994 10 H 0.033 0.967 11 C 0.131 3.869 12 N -0.742 5.742 13 C 0.230 3.770 14 C -0.200 4.200 15 C -0.045 4.045 16 C -0.213 4.213 17 C 0.111 3.889 18 F -0.154 7.154 19 C -0.213 4.213 20 C -0.052 4.052 21 H 0.268 0.732 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.412 0.588 25 H 0.154 0.846 26 H 0.170 0.830 27 H 0.149 0.851 28 H 0.050 0.950 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.187 -2.188 -2.424 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.180 4.180 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.164 1.164 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.014 4.014 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.372 5.372 13 C 0.125 3.875 14 C -0.222 4.222 15 C -0.063 4.063 16 C -0.234 4.234 17 C 0.091 3.909 18 F -0.132 7.132 19 C -0.219 4.219 20 C -0.090 4.090 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.249 0.751 25 H 0.172 0.828 26 H 0.188 0.812 27 H 0.167 0.833 28 H 0.068 0.932 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.779 -2.107 -2.406 18.065 hybrid contribution -0.748 0.677 0.282 1.048 sum 17.031 -1.431 -2.124 17.222 Atomic orbital electron populations 1.70041 1.08219 1.28276 1.51855 1.25917 0.95432 1.02860 0.93771 0.85799 0.79535 0.78678 0.79227 1.20161 1.16393 1.20992 1.21120 0.90552 0.93211 1.50780 0.94806 1.19319 0.94017 0.94691 0.93331 0.94910 1.21833 0.78579 1.00629 0.98291 1.44884 1.05692 1.52455 1.34139 1.17634 0.91731 0.90615 0.87485 1.21067 0.90989 1.06721 1.03438 1.21089 1.01082 0.93173 0.90995 1.21090 0.91306 1.08053 1.02926 1.17765 0.91926 0.96995 0.84206 1.91413 1.84174 1.84307 1.53346 1.19630 0.96871 1.08113 0.97277 1.20122 0.90072 0.98970 0.99830 0.92305 0.93441 0.90682 0.75121 0.82804 0.81219 0.83292 0.93157 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.96 21.45 0.30 -57.93 15 2 C 0.02 1.04 5.47 84.65 0.46 1.50 15 3 Si 0.94 43.52 26.82 68.60 1.84 45.36 15 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.24 -10.03 6.89 99.48 0.69 -9.35 15 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 7 C -0.52 -29.35 8.86 25.60 0.23 -29.12 15 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 15 9 C 0.01 0.29 1.86 -11.45 -0.02 0.27 15 10 H 0.03 1.56 5.47 -2.39 -0.01 1.55 15 11 C 0.13 5.19 6.37 86.44 0.55 5.74 15 12 N -0.74 -23.50 5.80 -337.71 -1.96 -25.46 15 13 C 0.23 7.42 6.47 38.13 0.25 7.67 15 14 C -0.20 -4.72 9.87 22.43 0.22 -4.50 15 15 C -0.05 -0.93 10.04 22.23 0.22 -0.71 15 16 C -0.21 -5.45 10.01 22.31 0.22 -5.23 15 17 C 0.11 3.78 7.23 22.41 0.16 3.94 15 18 F -0.15 -5.64 16.53 44.97 0.74 -4.89 15 19 C -0.21 -8.04 5.76 -19.71 -0.11 -8.15 15 20 C -0.05 -2.33 4.78 29.76 0.14 -2.19 15 21 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.07 2.90 8.00 -2.39 -0.02 2.88 15 24 H 0.41 10.06 8.86 -92.70 -0.82 9.24 15 25 H 0.15 2.60 8.06 -2.91 -0.02 2.58 15 26 H 0.17 2.03 8.06 -2.91 -0.02 2.01 15 27 H 0.15 3.02 8.06 -2.91 -0.02 3.00 15 28 H 0.05 2.33 7.83 -2.38 -0.02 2.32 15 29 H 0.05 2.31 8.12 -2.39 -0.02 2.29 15 Total: -1.00 -66.18 247.91 3.57 -62.61 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.32 Total: 11.10 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 2.33 Total: -30.77 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.66 Total: -83.40 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.74 Total: -4.89 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.84 Total: 45.36 kcal Total: -66.18 3.57 -62.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.950 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds