Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47238 * 30.00001 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00056 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99273 * 173.05793 * 7 2 1 9 9 C 1.50692 * 120.00201 * 353.05956 * 7 2 1 10 10 C 1.50699 * 115.55270 * 83.13709 * 9 7 2 11 11 C 1.38268 * 119.94503 * 234.31950 * 10 9 7 12 12 C 1.38293 * 120.16225 * 180.27279 * 11 10 9 13 13 C 1.38280 * 120.04292 * 359.45514 * 12 11 10 14 14 F 1.35107 * 120.05443 * 180.27121 * 13 12 11 15 15 C 1.39079 * 119.89036 * 0.52264 * 13 12 11 16 16 N 1.39850 * 120.08017 * 179.72608 * 15 13 12 17 17 C 1.38153 * 119.94277 * 54.29938 * 10 9 7 18 18 C 1.53005 * 117.49720 * 228.81047 * 9 7 2 19 19 C 1.53000 * 117.49935 * 297.46735 * 9 7 2 20 20 H 0.96993 * 120.00238 * 355.02338 * 1 2 3 21 21 H 1.07999 * 119.92195 * 0.02562 * 11 10 9 22 22 H 1.07996 * 119.97850 * 179.72550 * 12 11 10 23 23 H 0.96992 * 120.00209 * 180.02562 * 16 15 13 24 24 H 0.97001 * 120.00090 * 0.02885 * 16 15 13 25 25 H 1.08001 * 120.02262 * 0.02562 * 17 10 9 26 26 H 1.08995 * 117.49603 * 215.00302 * 18 9 7 27 27 H 1.08995 * 117.49636 * 0.02562 * 18 9 7 28 28 H 1.09008 * 117.50067 * 359.97438 * 19 9 7 29 29 H 1.09003 * 117.50392 * 144.99530 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0786 -1.1974 -0.1125 9 6 1.2594 -2.4943 0.1588 10 6 0.6566 -3.0557 -1.1031 11 6 -0.6904 -3.3648 -1.1463 12 6 -1.2472 -3.8855 -2.3001 13 6 -0.4596 -4.0882 -3.4184 14 9 -1.0044 -4.5918 -4.5476 15 6 0.8955 -3.7777 -3.3774 16 7 1.6969 -3.9864 -4.5043 17 6 1.4507 -3.2604 -2.2149 18 6 1.7882 -3.4902 1.1930 19 6 0.4960 -2.7164 1.4660 20 1 -0.4850 0.8368 0.0729 21 1 -1.3085 -3.2028 -0.2756 22 1 -2.2987 -4.1300 -2.3291 23 1 2.6418 -3.7698 -4.4743 24 1 1.3077 -4.3478 -5.3160 25 1 2.5027 -3.0186 -2.1795 26 1 1.7001 -4.5514 0.9607 27 1 2.6748 -3.2046 1.7592 28 1 0.5331 -1.9222 2.2117 29 1 -0.4424 -3.2686 1.4133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311201.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = -1.585564 kcal Electronic energy + Delta-G solvation = -14664.253148 eV Core-core repulsion = 12081.089316 eV Total energy + Delta-G solvation = -2583.163831 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.14758 -38.67845 -36.11140 -33.62813 -31.96024 -29.52318 -27.72729 -25.61696 -22.43094 -22.01987 -20.83066 -19.19915 -17.16017 -16.53638 -16.39206 -15.26115 -14.94645 -14.61537 -14.32662 -14.21475 -13.18812 -13.03263 -12.37183 -12.19074 -11.97284 -11.29500 -11.07542 -10.97967 -10.50996 -10.48554 -10.20468 -10.03588 -9.61795 -9.08272 -8.46786 -8.33225 -7.61419 -6.86584 -6.06098 -4.14247 2.10016 2.29335 3.27437 3.35141 3.37628 4.26784 4.37443 4.56122 5.02600 5.21785 5.33577 5.55571 5.83958 6.03857 6.31487 6.32788 6.38089 6.54844 6.65516 6.71288 6.91705 7.05904 7.08435 7.31401 7.41372 7.59732 7.77566 7.83664 8.03751 8.14831 8.36540 8.86283 9.51814 11.01585 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.009620 C = 0.008746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.918796 B = 2909.833587 C = 3200.757786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.062 0.938 9 C 0.068 3.932 10 C 0.044 3.956 11 C -0.138 4.138 12 C -0.115 4.115 13 C -0.018 4.018 14 F -0.160 7.160 15 C 0.177 3.823 16 N -0.883 5.883 17 C -0.159 4.159 18 C -0.199 4.199 19 C -0.159 4.159 20 H 0.261 0.739 21 H 0.124 0.876 22 H 0.120 0.880 23 H 0.397 0.603 24 H 0.393 0.607 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -6.367 -3.930 7.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.068 3.932 10 C 0.043 3.957 11 C -0.157 4.157 12 C -0.134 4.134 13 C -0.041 4.041 14 F -0.139 7.139 15 C 0.074 3.926 16 N -0.424 5.424 17 C -0.181 4.181 18 C -0.237 4.237 19 C -0.196 4.196 20 H 0.070 0.930 21 H 0.142 0.858 22 H 0.138 0.862 23 H 0.225 0.775 24 H 0.221 0.779 25 H 0.143 0.857 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.593 -6.242 -3.981 7.427 hybrid contribution 0.404 0.954 -0.559 1.177 sum 0.996 -5.288 -4.540 7.040 Atomic orbital electron populations 1.70031 1.05793 1.26867 1.47541 1.24970 0.94804 0.98876 0.94322 0.86675 0.80042 0.83595 0.78176 1.20656 1.21114 1.19799 1.20337 0.92715 0.88326 1.51881 0.92028 1.17680 0.97797 0.93540 0.84221 1.19595 0.92142 0.88627 0.95369 1.20743 0.95519 1.01947 0.97540 1.20780 0.99021 1.01240 0.92376 1.16994 0.90812 1.11860 0.84447 1.91335 1.86189 1.86358 1.50040 1.17708 0.88829 0.97209 0.88854 1.42205 1.11123 1.75941 1.13153 1.20279 1.00685 1.05847 0.91311 1.23022 0.98326 0.95676 1.06639 1.22640 0.92849 1.01328 1.02775 0.92954 0.85826 0.86198 0.77484 0.77926 0.85740 0.91419 0.90098 0.89927 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 13.03 55.43 0.72 -23.25 15 2 C 0.07 2.00 5.40 -17.82 -0.10 1.90 15 3 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.50 -13.02 8.54 -34.44 -0.29 -13.32 15 8 H 0.06 1.61 7.82 -52.49 -0.41 1.19 15 9 C 0.07 1.62 1.58 -156.81 -0.25 1.38 15 10 C 0.04 1.00 5.24 -104.64 -0.55 0.45 15 11 C -0.14 -2.93 9.30 -39.55 -0.37 -3.30 15 12 C -0.11 -2.23 10.02 -39.55 -0.40 -2.62 15 13 C -0.02 -0.35 7.31 -39.25 -0.29 -0.63 15 14 F -0.16 -2.93 16.64 2.25 0.04 -2.89 15 15 C 0.18 3.36 6.76 -83.67 -0.57 2.80 15 16 N -0.88 -13.15 9.10 32.46 0.30 -12.85 15 17 C -0.16 -3.32 9.29 -39.40 -0.37 -3.69 15 18 C -0.20 -4.19 9.94 -26.69 -0.27 -4.46 15 19 C -0.16 -3.56 9.12 -26.69 -0.24 -3.81 15 20 H 0.26 6.94 8.32 -40.82 -0.34 6.60 15 21 H 0.12 2.60 6.41 -52.49 -0.34 2.26 15 22 H 0.12 2.01 8.06 -52.49 -0.42 1.59 15 23 H 0.40 5.06 8.84 -40.82 -0.36 4.69 15 24 H 0.39 5.20 8.32 -40.82 -0.34 4.86 15 25 H 0.12 2.52 8.06 -52.49 -0.42 2.10 15 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 28 H 0.08 1.96 8.14 -51.92 -0.42 1.53 15 29 H 0.07 1.44 6.56 -51.93 -0.34 1.10 15 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -28.17 258.95 -6.78 -34.95 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.04 Total: 9.81 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.68 Total: -25.30 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 1.02 Total: -36.11 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.17 -6.78 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311201.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.366 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds