Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47238 * 30.00001 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00056 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99273 * 173.05793 * 7 2 1 9 9 C 1.50692 * 120.00201 * 353.05956 * 7 2 1 10 10 C 1.50699 * 115.55270 * 83.13709 * 9 7 2 11 11 C 1.38268 * 119.94503 * 234.31950 * 10 9 7 12 12 C 1.38293 * 120.16225 * 180.27279 * 11 10 9 13 13 C 1.38280 * 120.04292 * 359.45514 * 12 11 10 14 14 F 1.35107 * 120.05443 * 180.27121 * 13 12 11 15 15 C 1.39079 * 119.89036 * 0.52264 * 13 12 11 16 16 N 1.39850 * 120.08017 * 179.72608 * 15 13 12 17 17 C 1.38153 * 119.94277 * 54.29938 * 10 9 7 18 18 C 1.53005 * 117.49720 * 228.81047 * 9 7 2 19 19 C 1.53000 * 117.49935 * 297.46735 * 9 7 2 20 20 H 0.96993 * 120.00238 * 355.02338 * 1 2 3 21 21 H 1.07999 * 119.92195 * 0.02562 * 11 10 9 22 22 H 1.07996 * 119.97850 * 179.72550 * 12 11 10 23 23 H 0.96992 * 120.00209 * 180.02562 * 16 15 13 24 24 H 0.97001 * 120.00090 * 0.02885 * 16 15 13 25 25 H 1.08001 * 120.02262 * 0.02562 * 17 10 9 26 26 H 1.08995 * 117.49603 * 215.00302 * 18 9 7 27 27 H 1.08995 * 117.49636 * 0.02562 * 18 9 7 28 28 H 1.09008 * 117.50067 * 359.97438 * 19 9 7 29 29 H 1.09003 * 117.50392 * 144.99530 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0786 -1.1974 -0.1125 9 6 1.2594 -2.4943 0.1588 10 6 0.6566 -3.0557 -1.1031 11 6 -0.6904 -3.3648 -1.1463 12 6 -1.2472 -3.8855 -2.3001 13 6 -0.4596 -4.0882 -3.4184 14 9 -1.0044 -4.5918 -4.5476 15 6 0.8955 -3.7777 -3.3774 16 7 1.6969 -3.9864 -4.5043 17 6 1.4507 -3.2604 -2.2149 18 6 1.7882 -3.4902 1.1930 19 6 0.4960 -2.7164 1.4660 20 1 -0.4850 0.8368 0.0729 21 1 -1.3085 -3.2028 -0.2756 22 1 -2.2987 -4.1300 -2.3291 23 1 2.6418 -3.7698 -4.4743 24 1 1.3077 -4.3478 -5.3160 25 1 2.5027 -3.0186 -2.1795 26 1 1.7001 -4.5514 0.9607 27 1 2.6748 -3.2046 1.7592 28 1 0.5331 -1.9222 2.2117 29 1 -0.4424 -3.2686 1.4133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311201.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = -17.312598 kcal Electronic energy + Delta-G solvation = -14664.935123 eV Core-core repulsion = 12081.089316 eV Total energy + Delta-G solvation = -2583.845807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.62374 -40.26938 -37.77737 -35.08733 -33.93649 -31.09743 -29.21562 -27.59345 -24.02584 -23.66068 -22.51171 -20.92298 -18.72722 -18.23573 -17.84588 -16.87504 -16.53895 -16.40818 -15.91202 -15.76056 -14.95589 -14.53754 -13.96199 -13.89174 -13.50248 -13.07226 -12.96190 -12.83045 -12.31711 -12.11784 -11.88129 -11.57934 -11.39859 -10.85050 -10.42624 -10.10515 -9.23221 -8.32669 -8.05297 -6.18935 0.52515 0.73556 1.42746 1.45529 1.54068 2.45220 2.91052 3.01245 3.22943 3.50997 3.59968 4.01821 4.22204 4.47845 4.63554 4.72161 4.73213 4.92362 5.01979 5.09211 5.28607 5.35403 5.49757 5.65985 5.70354 5.77545 6.05025 6.16410 6.45134 6.59715 6.86220 6.99866 7.49119 9.00503 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.009620 C = 0.008746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.918796 B = 2909.833587 C = 3200.757786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.043 3.957 10 C 0.025 3.975 11 C -0.156 4.156 12 C -0.108 4.108 13 C -0.026 4.026 14 F -0.152 7.152 15 C 0.186 3.814 16 N -0.866 5.866 17 C -0.175 4.175 18 C -0.178 4.178 19 C -0.161 4.161 20 H 0.258 0.742 21 H 0.119 0.881 22 H 0.145 0.855 23 H 0.409 0.591 24 H 0.405 0.595 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -6.956 -4.879 8.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.042 3.958 10 C 0.024 3.976 11 C -0.176 4.176 12 C -0.127 4.127 13 C -0.050 4.050 14 F -0.131 7.131 15 C 0.080 3.920 16 N -0.408 5.408 17 C -0.198 4.198 18 C -0.215 4.215 19 C -0.199 4.199 20 H 0.067 0.933 21 H 0.137 0.863 22 H 0.163 0.837 23 H 0.239 0.761 24 H 0.234 0.766 25 H 0.143 0.857 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.992 -6.845 -4.955 8.508 hybrid contribution 0.312 1.072 -0.327 1.163 sum 1.304 -5.773 -5.283 7.933 Atomic orbital electron populations 1.70135 1.06864 1.27230 1.48877 1.25607 0.95496 1.01606 0.94354 0.85797 0.79092 0.80211 0.77938 1.20710 1.21043 1.19176 1.20622 0.92698 0.89823 1.51274 0.92628 1.17771 0.98881 0.93742 0.85376 1.19592 0.92924 0.89758 0.95314 1.20730 0.95150 1.03393 0.98313 1.21000 1.00290 0.99858 0.91599 1.17075 0.91069 1.12104 0.84761 1.91355 1.86073 1.86214 1.49504 1.17707 0.89142 0.95839 0.89263 1.42176 1.11538 1.74778 1.12354 1.20290 1.00708 1.07048 0.91775 1.23032 0.97500 0.96295 1.04713 1.22555 0.94173 1.01365 1.01774 0.93251 0.86345 0.83700 0.76079 0.76607 0.85741 0.89357 0.89770 0.91928 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.93 13.03 21.45 0.28 -49.65 15 2 C 0.03 1.66 5.40 84.65 0.46 2.11 15 3 Si 0.94 42.48 29.55 68.60 2.03 44.50 15 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 7 C -0.51 -26.72 8.54 25.60 0.22 -26.50 15 8 H 0.06 2.90 7.82 -2.91 -0.02 2.88 15 9 C 0.04 2.03 1.58 -53.68 -0.08 1.95 15 10 C 0.03 1.14 5.24 -19.88 -0.10 1.04 15 11 C -0.16 -6.55 9.30 22.29 0.21 -6.34 15 12 C -0.11 -4.02 10.02 22.29 0.22 -3.80 15 13 C -0.03 -0.97 7.31 22.48 0.16 -0.81 15 14 F -0.15 -5.15 16.64 44.97 0.75 -4.41 15 15 C 0.19 6.70 6.76 38.20 0.26 6.96 15 16 N -0.87 -23.54 9.10 -51.21 -0.47 -24.01 15 17 C -0.18 -7.17 9.29 22.39 0.21 -6.97 15 18 C -0.18 -7.34 9.94 30.62 0.30 -7.03 15 19 C -0.16 -7.26 9.12 30.62 0.28 -6.98 15 20 H 0.26 13.91 8.32 -92.71 -0.77 13.14 15 21 H 0.12 4.99 6.41 -2.91 -0.02 4.97 15 22 H 0.15 4.52 8.06 -2.91 -0.02 4.49 15 23 H 0.41 9.36 8.84 -92.71 -0.82 8.54 15 24 H 0.40 9.47 8.32 -92.71 -0.77 8.70 15 25 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 15 27 H 0.08 3.36 8.14 -2.39 -0.02 3.34 15 28 H 0.06 3.02 8.14 -2.38 -0.02 3.00 15 29 H 0.08 3.36 6.56 -2.39 -0.02 3.34 15 Total: -1.00 -58.45 258.95 4.32 -54.13 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.40 Total: 25.79 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 2.13 Total: -46.37 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -0.19 Total: -73.65 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.75 Total: -4.41 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -58.45 4.32 -54.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311201.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.822 kcal (2) G-P(sol) polarization free energy of solvation -58.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds