Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48498 * 109.46894 * 240.00136 * 3 2 1 5 5 H 1.48496 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47177 * 120.00073 * 3 2 1 7 7 C 1.38827 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36978 * 120.00397 * 359.97438 * 7 2 1 10 10 C 1.38441 * 120.00298 * 179.97438 * 9 7 2 11 11 N 1.32551 * 119.21567 * 0.02562 * 10 9 7 12 12 C 1.32201 * 120.69127 * 180.08871 * 11 10 9 13 13 C 1.38833 * 119.15160 * 359.96625 * 12 11 10 14 14 C 1.38109 * 118.68202 * 359.87720 * 13 12 11 15 15 N 1.32472 * 119.21676 * 179.97438 * 10 9 7 16 16 C 1.50583 * 121.32542 * 180.50566 * 14 13 12 17 17 C 1.53029 * 109.65711 * 342.95651 * 16 14 13 18 18 O 1.42923 * 108.55547 * 49.13340 * 17 16 14 19 19 C 1.42817 * 113.40343 * 289.35529 * 18 17 16 20 20 H 0.96997 * 120.00273 * 359.97438 * 1 2 3 21 21 H 0.97007 * 120.00307 * 0.02562 * 9 7 2 22 22 H 1.07999 * 120.42117 * 179.97438 * 12 11 10 23 23 H 1.08997 * 109.43842 * 103.01081 * 16 14 13 24 24 H 1.08996 * 109.43744 * 222.89728 * 16 14 13 25 25 H 1.08996 * 109.61544 * 168.90802 * 17 16 14 26 26 H 1.09006 * 109.61124 * 289.25653 * 17 16 14 27 27 H 1.09002 * 109.36024 * 291.45291 * 19 18 17 28 28 H 1.08998 * 109.36023 * 171.72453 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1032 1.6965 1.2124 7 6 2.0096 -1.2023 -0.0005 8 1 3.0897 -1.2023 -0.0010 9 7 1.3248 -2.3886 -0.0005 10 6 2.0170 -3.5875 -0.0016 11 7 3.3424 -3.5694 -0.0021 12 6 4.0327 -4.6969 -0.0049 13 6 3.3517 -5.9067 -0.0066 14 6 1.9707 -5.8901 -0.0027 15 7 1.3390 -4.7256 -0.0011 16 6 1.1724 -7.1669 0.0071 17 6 2.0666 -8.3362 -0.4110 18 8 3.2739 -8.2811 0.3519 19 6 4.1268 -7.1955 -0.0137 20 1 -0.4850 0.8400 0.0004 21 1 0.3547 -2.3887 -0.0005 22 1 5.1125 -4.6770 -0.0057 23 1 0.7868 -7.3459 1.0107 24 1 0.3397 -7.0793 -0.6907 25 1 1.5525 -9.2776 -0.2168 26 1 2.2981 -8.2582 -1.4734 27 1 4.5271 -7.3709 -1.0123 28 1 4.9493 -7.1265 0.6983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = 4.663454 kcal Electronic energy + Delta-G solvation = -14495.174589 eV Core-core repulsion = 11932.201697 eV Total energy + Delta-G solvation = -2562.972892 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21791 -38.00406 -35.34272 -33.33308 -32.29379 -30.51758 -30.24838 -25.61122 -24.61466 -23.61551 -22.36543 -20.16651 -18.24477 -16.92307 -16.49109 -16.14498 -15.25408 -14.77567 -14.38690 -14.09087 -13.72751 -13.36913 -13.13367 -12.75094 -12.29480 -11.71981 -11.56825 -11.27926 -11.01481 -10.63113 -10.43113 -10.34163 -10.15294 -9.55641 -9.22541 -8.84144 -7.98280 -7.31661 -6.69503 -3.88805 2.08492 2.22689 3.12857 3.14351 3.16230 3.91551 4.11468 4.48623 4.59938 4.94558 5.12104 5.18799 5.38133 5.43000 5.59040 5.66011 5.76871 5.86895 5.94397 6.11296 6.26188 6.42262 6.74002 7.21182 7.35945 7.39639 7.75245 8.19045 8.54425 8.94336 9.17389 9.76374 10.46229 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.065552 B = 0.006572 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.036829 B = 4259.374100 C = 4646.364338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.283 4.283 8 H 0.116 0.884 9 N -0.496 5.496 10 C 0.491 3.509 11 N -0.571 5.571 12 C 0.209 3.791 13 C -0.379 4.379 14 C 0.236 3.764 15 N -0.599 5.599 16 C -0.102 4.102 17 C 0.067 3.933 18 O -0.383 6.383 19 C 0.140 3.860 20 H 0.279 0.721 21 H 0.411 0.589 22 H 0.147 0.853 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -10.244 -1.076 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.414 4.414 8 H 0.134 0.866 9 N -0.105 5.105 10 C 0.137 3.863 11 N -0.296 5.296 12 C 0.034 3.966 13 C -0.394 4.394 14 C 0.083 3.917 15 N -0.326 5.326 16 C -0.140 4.140 17 C -0.010 4.010 18 O -0.302 6.302 19 C 0.062 3.938 20 H 0.089 0.911 21 H 0.248 0.752 22 H 0.164 0.836 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.679 -8.852 -0.925 9.630 hybrid contribution 0.245 0.373 -0.195 0.487 sum 3.923 -8.479 -1.120 9.410 Atomic orbital electron populations 1.69686 1.06177 1.29194 1.46959 1.25490 0.95833 1.00352 0.96830 0.85711 0.78700 0.79334 0.79377 1.19492 1.20668 1.19487 1.19991 0.93904 0.81348 1.46189 0.86584 1.40600 1.08586 1.00863 1.60497 1.19057 0.85451 0.85907 0.95880 1.67859 1.07437 1.30206 1.24048 1.22400 0.98983 0.86732 0.88502 1.20639 0.95739 0.97336 1.25644 1.20312 0.90196 0.92331 0.88836 1.67625 1.40606 0.97388 1.26955 1.20968 0.98295 0.91127 1.03620 1.22487 0.85587 0.97789 0.95176 1.87907 1.31524 1.49151 1.61584 1.20824 0.91174 0.82623 0.99140 0.91108 0.75162 0.83560 0.89389 0.89308 0.88634 0.92941 0.93668 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 13.05 55.49 0.72 -22.99 15 2 C 0.02 0.52 5.50 -17.45 -0.10 0.42 15 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.28 -7.62 9.69 -15.03 -0.15 -7.77 15 8 H 0.12 3.12 7.05 -52.48 -0.37 2.75 15 9 N -0.50 -13.22 5.43 -12.79 -0.07 -13.29 15 10 C 0.49 12.46 8.38 -322.71 -2.70 9.76 15 11 N -0.57 -13.66 9.10 -13.87 -0.13 -13.78 15 12 C 0.21 4.08 10.98 -17.17 -0.19 3.90 15 13 C -0.38 -7.01 5.81 -104.60 -0.61 -7.62 15 14 C 0.24 4.72 6.68 -82.42 -0.55 4.17 15 15 N -0.60 -14.08 10.38 -10.25 -0.11 -14.18 15 16 C -0.10 -1.56 6.27 -27.92 -0.18 -1.73 15 17 C 0.07 0.86 6.84 37.17 0.25 1.11 15 18 O -0.38 -5.73 10.77 -35.23 -0.38 -6.11 15 19 C 0.14 2.04 6.72 35.86 0.24 2.28 15 20 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.41 11.08 8.01 -40.82 -0.33 10.75 15 22 H 0.15 2.24 8.06 -52.49 -0.42 1.82 15 23 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.05 0.63 8.08 -51.93 -0.42 0.21 15 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -29.73 246.70 -8.02 -37.75 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -2.79 Total: 9.29 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.97 Total: 4.51 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.42 Total: -64.24 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.38 Total: -6.11 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.73 -8.02 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.418 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds