Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48498 * 109.46894 * 240.00136 * 3 2 1 5 5 H 1.48496 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47177 * 120.00073 * 3 2 1 7 7 C 1.38827 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36978 * 120.00397 * 359.97438 * 7 2 1 10 10 C 1.38441 * 120.00298 * 179.97438 * 9 7 2 11 11 N 1.32551 * 119.21567 * 0.02562 * 10 9 7 12 12 C 1.32201 * 120.69127 * 180.08871 * 11 10 9 13 13 C 1.38833 * 119.15160 * 359.96625 * 12 11 10 14 14 C 1.38109 * 118.68202 * 359.87720 * 13 12 11 15 15 N 1.32472 * 119.21676 * 179.97438 * 10 9 7 16 16 C 1.50583 * 121.32542 * 180.50566 * 14 13 12 17 17 C 1.53029 * 109.65711 * 342.95651 * 16 14 13 18 18 O 1.42923 * 108.55547 * 49.13340 * 17 16 14 19 19 C 1.42817 * 113.40343 * 289.35529 * 18 17 16 20 20 H 0.96997 * 120.00273 * 359.97438 * 1 2 3 21 21 H 0.97007 * 120.00307 * 0.02562 * 9 7 2 22 22 H 1.07999 * 120.42117 * 179.97438 * 12 11 10 23 23 H 1.08997 * 109.43842 * 103.01081 * 16 14 13 24 24 H 1.08996 * 109.43744 * 222.89728 * 16 14 13 25 25 H 1.08996 * 109.61544 * 168.90802 * 17 16 14 26 26 H 1.09006 * 109.61124 * 289.25653 * 17 16 14 27 27 H 1.09002 * 109.36024 * 291.45291 * 19 18 17 28 28 H 1.08998 * 109.36023 * 171.72453 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1032 1.6965 1.2124 7 6 2.0096 -1.2023 -0.0005 8 1 3.0897 -1.2023 -0.0010 9 7 1.3248 -2.3886 -0.0005 10 6 2.0170 -3.5875 -0.0016 11 7 3.3424 -3.5694 -0.0021 12 6 4.0327 -4.6969 -0.0049 13 6 3.3517 -5.9067 -0.0066 14 6 1.9707 -5.8901 -0.0027 15 7 1.3390 -4.7256 -0.0011 16 6 1.1724 -7.1669 0.0071 17 6 2.0666 -8.3362 -0.4110 18 8 3.2739 -8.2811 0.3519 19 6 4.1268 -7.1955 -0.0137 20 1 -0.4850 0.8400 0.0004 21 1 0.3547 -2.3887 -0.0005 22 1 5.1125 -4.6770 -0.0057 23 1 0.7868 -7.3459 1.0107 24 1 0.3397 -7.0793 -0.6907 25 1 1.5525 -9.2776 -0.2168 26 1 2.2981 -8.2582 -1.4734 27 1 4.5271 -7.3709 -1.0123 28 1 4.9493 -7.1265 0.6983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -14.664920 kcal Electronic energy + Delta-G solvation = -14496.012731 eV Core-core repulsion = 11932.201697 eV Total energy + Delta-G solvation = -2563.811033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.84279 -39.34928 -37.10038 -34.91250 -34.07693 -31.95987 -31.81275 -27.34984 -26.07032 -25.11635 -23.89430 -21.67800 -20.07149 -18.60086 -18.11635 -17.38628 -16.65502 -16.35236 -15.83802 -15.69393 -15.45943 -14.91426 -14.54585 -14.05611 -13.72318 -13.48950 -13.05449 -12.78988 -12.59389 -12.16045 -12.12664 -11.95307 -11.63060 -11.19954 -10.65015 -10.50689 -9.71788 -9.05744 -8.56899 -5.87855 0.42908 0.56988 1.39676 1.48358 1.52485 2.18791 2.72773 2.80562 3.03994 3.36384 3.49635 3.80040 4.06316 4.20374 4.32875 4.35717 4.49315 4.67102 4.77921 4.82990 4.89965 5.04814 5.24384 5.32874 5.61610 5.94993 6.25556 6.48631 6.63815 7.09507 7.30493 7.92595 8.60999 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.065552 B = 0.006572 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.036829 B = 4259.374100 C = 4646.364338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.010 2.990 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.308 4.308 8 H 0.107 0.893 9 N -0.529 5.529 10 C 0.488 3.512 11 N -0.602 5.602 12 C 0.198 3.802 13 C -0.356 4.356 14 C 0.211 3.789 15 N -0.623 5.623 16 C -0.102 4.102 17 C 0.069 3.931 18 O -0.392 6.392 19 C 0.139 3.861 20 H 0.280 0.720 21 H 0.401 0.599 22 H 0.192 0.808 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -12.509 -1.271 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.226 4.226 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.439 4.439 8 H 0.125 0.875 9 N -0.142 5.142 10 C 0.133 3.867 11 N -0.328 5.328 12 C 0.026 3.974 13 C -0.369 4.369 14 C 0.061 3.939 15 N -0.351 5.351 16 C -0.140 4.140 17 C -0.008 4.008 18 O -0.310 6.310 19 C 0.061 3.939 20 H 0.089 0.911 21 H 0.237 0.763 22 H 0.209 0.791 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.149 0.851 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.583 -11.238 -1.121 12.598 hybrid contribution -0.201 0.639 -0.138 0.684 sum 5.382 -10.599 -1.259 11.954 Atomic orbital electron populations 1.69786 1.07471 1.29808 1.49222 1.26365 0.96646 1.03197 0.96358 0.84728 0.77447 0.75200 0.79416 1.18960 1.19971 1.19042 1.20046 0.93602 0.82243 1.48000 0.87492 1.40551 1.07958 1.01337 1.64309 1.19438 0.86291 0.86266 0.94711 1.67903 1.07049 1.32536 1.25276 1.23248 1.01009 0.86037 0.87098 1.21323 0.95609 0.99227 1.20705 1.21302 0.91847 0.92873 0.87900 1.67721 1.41467 0.98065 1.27830 1.21153 0.98723 0.89762 1.04321 1.22697 0.84551 0.97982 0.95526 1.87923 1.32149 1.48673 1.62248 1.21045 0.91006 0.80227 1.01573 0.91086 0.76339 0.79122 0.88915 0.88471 0.85070 0.91806 0.90932 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 13.05 21.65 0.28 -51.54 15 2 C -0.03 -1.37 5.50 84.88 0.47 -0.90 15 3 Si 1.01 42.25 29.55 68.60 2.03 44.28 15 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 7 C -0.31 -17.36 9.69 84.03 0.81 -16.54 15 8 H 0.11 6.00 7.05 -2.91 -0.02 5.98 15 9 N -0.53 -29.60 5.43 -194.38 -1.05 -30.65 15 10 C 0.49 25.36 8.38 261.45 2.19 27.55 15 11 N -0.60 -28.81 9.10 -197.80 -1.80 -30.61 15 12 C 0.20 7.27 10.98 84.78 0.93 8.20 15 13 C -0.36 -12.09 5.81 -19.85 -0.12 -12.21 15 14 C 0.21 8.07 6.68 42.39 0.28 8.35 15 15 N -0.62 -29.56 10.38 -186.35 -1.93 -31.49 15 16 C -0.10 -2.83 6.27 29.82 0.19 -2.64 15 17 C 0.07 1.46 6.84 71.99 0.49 1.95 15 18 O -0.39 -9.81 10.77 -148.98 -1.61 -11.42 15 19 C 0.14 3.35 6.72 71.14 0.48 3.83 15 20 H 0.28 14.63 8.31 -92.71 -0.77 13.86 15 21 H 0.40 23.08 8.01 -92.70 -0.74 22.33 15 22 H 0.19 5.11 8.06 -2.91 -0.02 5.08 15 23 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.13 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.06 1.23 8.08 -2.38 -0.02 1.21 15 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -67.26 246.70 2.09 -65.17 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.45 Total: 28.68 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.73 Total: 17.59 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -4.51 Total: -144.29 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.61 Total: -11.42 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.26 2.09 -65.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.501 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds