Wall clock time and date at job start Mon Mar 30 2020 03:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38614 * 119.95644 * 2 1 4 4 C 1.38774 * 118.07669 * 180.02562 * 3 2 1 5 5 C 1.39820 * 117.89298 * 359.97438 * 4 3 2 6 6 C 1.47989 * 120.18995 * 179.97438 * 5 4 3 7 7 O 1.21565 * 120.00300 * 354.03753 * 6 5 4 8 8 N 1.34783 * 120.00076 * 174.04366 * 6 5 4 9 9 C 1.46497 * 119.99569 * 5.11107 * 8 6 5 10 10 C 1.36783 * 120.00221 * 185.11500 * 8 6 5 11 11 H 1.08002 * 119.99909 * 329.39083 * 10 8 6 12 12 C 1.39103 * 120.00176 * 149.39320 * 10 8 6 13 13 N 1.31327 * 120.00100 * 163.75552 * 12 10 8 14 14 Si 1.86801 * 119.99957 * 343.74986 * 12 10 8 15 15 H 1.48498 * 109.46978 * 88.28593 * 14 12 10 16 16 H 1.48502 * 109.47157 * 208.28842 * 14 12 10 17 17 H 1.48509 * 109.47044 * 328.28550 * 14 12 10 18 18 N 1.32858 * 119.61774 * 0.02744 * 5 4 3 19 19 N 1.28349 * 122.01592 * 359.97341 * 18 5 4 20 20 H 1.08996 * 109.47301 * 269.98069 * 1 2 3 21 21 H 1.09003 * 109.46784 * 29.97778 * 1 2 3 22 22 H 1.09000 * 109.46794 * 149.97916 * 1 2 3 23 23 H 1.07994 * 120.96172 * 359.97438 * 3 2 1 24 24 H 1.07995 * 121.05670 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47458 * 54.38430 * 9 8 6 26 26 H 1.08999 * 109.47195 * 174.38759 * 9 8 6 27 27 H 1.09001 * 109.47359 * 294.38121 * 9 8 6 28 28 H 0.96993 * 119.99863 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2010 0.0000 4 6 3.5862 1.1554 -0.0005 5 6 4.1994 -0.1011 -0.0005 6 6 5.6754 -0.2089 -0.0017 7 8 6.3578 0.7911 -0.1120 8 7 6.2630 -1.4158 0.1195 9 6 5.4442 -2.6304 0.1396 10 6 7.6239 -1.5065 0.2237 11 1 8.2525 -0.7717 -0.2573 12 6 8.1982 -2.5452 0.9492 13 7 9.4716 -2.8274 0.7961 14 14 7.1582 -3.5385 2.1413 15 1 6.5272 -4.6734 1.4209 16 1 8.0192 -4.0618 3.2322 17 1 6.1012 -2.6696 2.7187 18 7 3.4494 -1.1977 -0.0005 19 7 2.1670 -1.1450 -0.0001 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6743 2.1448 -0.0004 24 1 4.1734 2.0618 -0.0010 25 1 4.8068 -2.6536 -0.7442 26 1 6.0932 -3.5061 0.1426 27 1 4.8234 -2.6353 1.0356 28 1 9.8719 -3.5519 1.3017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260331757.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:12 Heat of formation + Delta-G solvation = 22.804034 kcal Electronic energy + Delta-G solvation = -14738.436494 eV Core-core repulsion = 12176.250237 eV Total energy + Delta-G solvation = -2562.186257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20557 -40.28951 -37.04181 -35.07498 -34.16475 -33.96438 -29.71924 -28.29448 -27.23143 -25.75376 -24.05642 -21.74212 -19.31739 -18.91810 -18.00461 -17.53365 -16.82874 -16.55330 -15.94721 -15.66532 -15.13918 -14.59899 -14.35928 -14.22881 -14.01272 -13.89928 -13.63667 -13.13856 -12.60862 -12.49618 -12.04838 -11.79336 -11.29792 -11.26016 -10.72542 -10.69457 -10.61645 -9.93775 -8.63823 -6.23697 -0.51035 -0.20839 1.18687 1.27569 1.40101 1.73440 2.08961 2.35723 2.57309 2.88158 2.98420 3.42650 3.59795 3.76819 3.95083 4.08511 4.29294 4.56364 4.62026 4.74918 4.82611 4.85227 5.03485 5.11203 5.35410 5.39735 5.87511 6.33262 6.69547 7.07837 7.52139 7.65934 8.51634 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045332 B = 0.008810 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.518031 B = 3177.516981 C = 3631.824094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.070 3.930 3 C -0.098 4.098 4 C -0.081 4.081 5 C 0.017 3.983 6 C 0.489 3.511 7 O -0.607 6.607 8 N -0.445 5.445 9 C 0.069 3.931 10 C -0.342 4.342 11 H 0.062 0.938 12 C 0.017 3.983 13 N -0.895 5.895 14 Si 0.957 3.043 15 H -0.236 1.236 16 H -0.279 1.279 17 H -0.268 1.268 18 N -0.237 5.237 19 N -0.276 5.276 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.081 0.919 23 H 0.206 0.794 24 H 0.163 0.837 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 3.550 0.691 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 C -0.127 4.127 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.277 3.723 7 O -0.492 6.492 8 N -0.163 5.163 9 C -0.073 4.073 10 C -0.470 4.470 11 H 0.080 0.920 12 C -0.187 4.187 13 N -0.532 5.532 14 Si 0.780 3.220 15 H -0.160 1.160 16 H -0.206 1.206 17 H -0.193 1.193 18 N -0.083 5.083 19 N -0.119 5.119 20 H 0.119 0.881 21 H 0.131 0.869 22 H 0.100 0.900 23 H 0.223 0.777 24 H 0.180 0.820 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.722 2.222 0.664 19.858 hybrid contribution 0.746 1.095 0.370 1.376 sum -18.976 3.317 1.033 19.292 Atomic orbital electron populations 1.20869 0.83749 1.05644 1.05051 1.23801 1.01262 0.89965 0.92431 1.22774 0.92414 1.01762 0.95719 1.22580 0.96655 0.97951 0.93790 1.22786 0.95170 0.93612 1.01347 1.18028 0.86242 0.83510 0.84485 1.90600 1.64771 1.36847 1.56985 1.43720 1.06254 1.05450 1.60834 1.22402 0.94617 0.86614 1.03651 1.18946 0.80497 1.13904 1.33627 0.91985 1.26166 0.97112 0.97731 0.97688 1.69744 1.13756 1.29899 1.39762 0.85852 0.78226 0.79498 0.78441 1.16008 1.20566 1.19267 1.73622 1.00131 1.25945 1.08608 1.72991 1.00851 1.26906 1.11195 0.88147 0.86931 0.89996 0.77690 0.81982 0.89356 0.91049 0.91329 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.19 71.24 0.73 -0.36 15 2 C 0.07 1.56 6.87 42.60 0.29 1.85 15 3 C -0.10 -2.00 9.86 22.49 0.22 -1.77 15 4 C -0.08 -2.48 9.73 22.78 0.22 -2.26 15 5 C 0.02 0.69 6.75 41.96 0.28 0.97 15 6 C 0.49 25.36 7.60 86.83 0.66 26.02 15 7 O -0.61 -35.18 16.17 -3.92 -0.06 -35.24 15 8 N -0.44 -23.87 2.74 -662.07 -1.81 -25.68 15 9 C 0.07 3.09 6.63 127.77 0.85 3.94 15 10 C -0.34 -20.90 9.60 84.13 0.81 -20.10 15 11 H 0.06 4.34 7.72 -2.91 -0.02 4.31 15 12 C 0.02 1.00 5.27 84.98 0.45 1.44 15 13 N -0.90 -53.24 13.95 21.69 0.30 -52.93 15 14 Si 0.96 43.29 24.26 68.60 1.66 44.95 15 15 H -0.24 -9.39 6.48 99.48 0.64 -8.75 15 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 17 H -0.27 -12.21 6.70 99.48 0.67 -11.55 15 18 N -0.24 -9.14 7.22 -48.51 -0.35 -9.49 15 19 N -0.28 -8.78 11.43 -47.51 -0.54 -9.32 15 20 H 0.10 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.11 0.57 8.09 -2.39 -0.02 0.55 15 22 H 0.08 1.00 8.14 -2.39 -0.02 0.98 15 23 H 0.21 1.85 8.06 -2.91 -0.02 1.83 15 24 H 0.16 4.75 7.73 -2.91 -0.02 4.73 15 25 H 0.09 3.64 6.84 -2.39 -0.02 3.63 15 26 H 0.07 3.15 4.35 -2.39 -0.01 3.14 15 27 H 0.07 2.92 6.17 -2.39 -0.01 2.90 15 28 H 0.29 15.46 8.31 -92.71 -0.77 14.69 15 Total: -1.00 -76.88 242.12 4.79 -72.09 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.08 Total: 5.89 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.51 Total: 9.74 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -2.40 Total: -97.43 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.06 Total: -35.24 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.66 Total: 44.95 kcal Total: -76.88 4.79 -72.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260331757.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.899 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds