Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48495 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46943 * 299.99896 * 3 2 1 6 6 H 1.48500 * 109.47020 * 59.99845 * 3 2 1 7 7 C 1.37879 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46904 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.26883 * 307.07369 * 10 9 7 12 12 C 1.53747 * 110.30042 * 185.00039 * 10 9 7 13 13 C 1.51221 * 104.53444 * 241.07517 * 12 10 9 14 14 C 1.38597 * 108.54828 * 0.27392 * 13 12 10 15 15 C 1.39648 * 119.04551 * 180.38205 * 14 13 12 16 16 C 1.37891 * 120.33154 * 359.43079 * 15 14 13 17 17 C 1.38215 * 120.25851 * 0.27736 * 16 15 14 18 18 C 1.38349 * 130.99119 * 180.02562 * 13 12 10 19 19 F 1.35097 * 119.95018 * 359.95866 * 18 13 12 20 20 N 1.39583 * 111.63735 * 359.53349 * 14 13 12 21 21 H 0.96996 * 120.00311 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46931 * 60.00113 * 9 7 2 23 23 H 1.09001 * 109.47174 * 299.99638 * 9 7 2 24 24 H 1.09001 * 110.42310 * 122.31446 * 12 10 9 25 25 H 1.08999 * 110.42299 * 359.83847 * 12 10 9 26 26 H 1.08002 * 119.83691 * 179.71200 * 15 14 13 27 27 H 1.07996 * 119.86718 * 180.29823 * 16 15 14 28 28 H 1.08002 * 120.09908 * 179.97438 * 17 16 15 29 29 H 0.97000 * 124.95074 * 180.18098 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9593 -3.5484 -0.8153 12 6 1.5003 -5.0010 -0.1252 13 6 1.8490 -5.7497 1.1416 14 6 2.6821 -4.9520 1.9101 15 6 3.1468 -5.4384 3.1338 16 6 2.7708 -6.6899 3.5739 17 6 1.9347 -7.4767 2.8043 18 6 1.4733 -7.0047 1.5866 19 9 0.6557 -7.7710 0.8320 20 7 2.9460 -3.7318 1.2857 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8903 24 1 1.8494 -5.5499 -0.9997 25 1 0.4248 -4.8337 -0.1843 26 1 3.8004 -4.8294 3.7408 27 1 3.1308 -7.0567 4.5237 28 1 1.6422 -8.4567 3.1512 29 1 3.5075 -3.0305 1.6513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381532.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -26.754342 kcal Electronic energy + Delta-G solvation = -14385.253249 eV Core-core repulsion = 11800.998017 eV Total energy + Delta-G solvation = -2584.255232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.52830 -39.83683 -36.19520 -33.01673 -31.30729 -30.14310 -28.33422 -26.77364 -23.34494 -21.88635 -21.19336 -20.15411 -17.65011 -16.45599 -16.11801 -15.41315 -15.34056 -14.74402 -14.64760 -14.43162 -13.66551 -12.72395 -12.49714 -12.35682 -11.83659 -11.81730 -11.64883 -11.25977 -11.07984 -10.93100 -10.59396 -10.45156 -10.06438 -9.34561 -9.18841 -8.48196 -8.30127 -6.88921 -6.10468 -4.14461 1.54768 1.80928 3.23793 3.32038 3.34314 3.92697 4.01689 4.36273 4.67307 4.95782 5.17177 5.26304 5.30159 5.59857 5.72839 5.77291 5.80382 6.26966 6.36070 6.36393 6.51172 6.66198 6.68868 6.74944 7.07235 7.40398 7.56245 7.74663 7.86225 8.24669 8.42715 8.91010 9.50250 11.00479 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047173 B = 0.006780 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.422589 B = 4128.976284 C = 4475.490709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.012 3.988 10 C 0.147 3.853 11 H 0.070 0.930 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.241 3.759 15 C -0.208 4.208 16 C -0.048 4.048 17 C -0.229 4.229 18 C 0.154 3.846 19 F -0.145 7.145 20 N -0.711 5.711 21 H 0.261 0.739 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -11.144 4.215 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.025 4.025 10 C 0.043 3.957 11 H 0.088 0.912 12 C -0.114 4.114 13 C -0.223 4.223 14 C 0.131 3.869 15 C -0.231 4.231 16 C -0.067 4.067 17 C -0.251 4.251 18 C 0.134 3.866 19 F -0.124 7.124 20 N -0.337 5.337 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.892 -10.895 4.001 12.596 hybrid contribution 0.428 1.209 0.089 1.285 sum 5.319 -9.687 4.090 11.784 Atomic orbital electron populations 1.69964 1.06079 1.26695 1.50231 1.25011 0.94827 0.99296 0.95121 0.86537 0.80001 0.83793 0.77657 1.19785 1.20943 1.21026 1.21152 0.92828 0.90847 1.51315 0.92697 1.19570 0.93724 0.91083 0.98149 1.21743 0.94439 0.95227 0.84289 0.91237 1.21125 1.01787 0.94363 0.94081 1.19892 1.06682 0.95038 1.00728 1.18252 0.90913 0.86397 0.91337 1.20332 1.08059 0.98091 0.96634 1.20460 0.95127 0.92798 0.98280 1.20619 1.06508 1.02369 0.95581 1.16981 0.91593 0.88002 0.90007 1.91437 1.70339 1.74875 1.75759 1.45182 1.52485 1.14942 1.21066 0.92891 0.95256 0.95754 0.90775 0.89786 0.86265 0.85627 0.85588 0.74672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.52 -13.94 8.96 -34.44 -0.31 -14.25 15 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 15 9 C 0.01 0.31 4.46 -27.88 -0.12 0.18 15 10 C 0.15 2.94 3.61 -67.52 -0.24 2.69 15 11 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 12 C -0.08 -1.38 6.58 -27.24 -0.18 -1.56 15 13 C -0.22 -3.89 6.21 -104.19 -0.65 -4.53 15 14 C 0.24 4.21 7.03 -83.67 -0.59 3.62 15 15 C -0.21 -3.08 10.07 -39.18 -0.39 -3.47 15 16 C -0.05 -0.63 10.02 -39.72 -0.40 -1.03 15 17 C -0.23 -3.25 10.04 -39.49 -0.40 -3.65 15 18 C 0.15 2.55 7.29 -39.44 -0.29 2.27 15 19 F -0.15 -2.42 17.26 2.25 0.04 -2.38 15 20 N -0.71 -13.15 6.01 -51.68 -0.31 -13.46 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.03 0.76 8.14 -51.92 -0.42 0.34 15 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.08 1.57 7.71 -51.93 -0.40 1.17 15 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.81 15 28 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 29 H 0.41 7.29 8.96 -40.82 -0.37 6.92 15 LS Contribution 256.60 15.07 3.87 3.87 Total: -1.00 -29.04 256.60 -7.62 -36.66 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.27 Total: 2.89 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.66 Total: -18.18 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.43 Total: -38.82 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.04 -7.62 -36.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381532.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.905 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds