Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48495 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46943 * 299.99896 * 3 2 1 6 6 H 1.48500 * 109.47020 * 59.99845 * 3 2 1 7 7 C 1.37879 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46904 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.26883 * 307.07369 * 10 9 7 12 12 C 1.53747 * 110.30042 * 185.00039 * 10 9 7 13 13 C 1.51221 * 104.53444 * 241.07517 * 12 10 9 14 14 C 1.38597 * 108.54828 * 0.27392 * 13 12 10 15 15 C 1.39648 * 119.04551 * 180.38205 * 14 13 12 16 16 C 1.37891 * 120.33154 * 359.43079 * 15 14 13 17 17 C 1.38215 * 120.25851 * 0.27736 * 16 15 14 18 18 C 1.38349 * 130.99119 * 180.02562 * 13 12 10 19 19 F 1.35097 * 119.95018 * 359.95866 * 18 13 12 20 20 N 1.39583 * 111.63735 * 359.53349 * 14 13 12 21 21 H 0.96996 * 120.00311 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46931 * 60.00113 * 9 7 2 23 23 H 1.09001 * 109.47174 * 299.99638 * 9 7 2 24 24 H 1.09001 * 110.42310 * 122.31446 * 12 10 9 25 25 H 1.08999 * 110.42299 * 359.83847 * 12 10 9 26 26 H 1.08002 * 119.83691 * 179.71200 * 15 14 13 27 27 H 1.07996 * 119.86718 * 180.29823 * 16 15 14 28 28 H 1.08002 * 120.09908 * 179.97438 * 17 16 15 29 29 H 0.97000 * 124.95074 * 180.18098 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9593 -3.5484 -0.8153 12 6 1.5003 -5.0010 -0.1252 13 6 1.8490 -5.7497 1.1416 14 6 2.6821 -4.9520 1.9101 15 6 3.1468 -5.4384 3.1338 16 6 2.7708 -6.6899 3.5739 17 6 1.9347 -7.4767 2.8043 18 6 1.4733 -7.0047 1.5866 19 9 0.6557 -7.7710 0.8320 20 7 2.9460 -3.7318 1.2857 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8903 24 1 1.8494 -5.5499 -0.9997 25 1 0.4248 -4.8337 -0.1843 26 1 3.8004 -4.8294 3.7408 27 1 3.1308 -7.0567 4.5237 28 1 1.6422 -8.4567 3.1512 29 1 3.5075 -3.0305 1.6513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381532.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -43.727670 kcal Electronic energy + Delta-G solvation = -14385.989268 eV Core-core repulsion = 11800.998017 eV Total energy + Delta-G solvation = -2584.991250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.79544 -41.17047 -37.55818 -35.01516 -32.66363 -31.79078 -29.62009 -28.47190 -25.18784 -23.17438 -22.46508 -21.79286 -18.99948 -18.45898 -17.44553 -16.81316 -16.54766 -16.48088 -16.04015 -15.82154 -15.15965 -14.30061 -14.01951 -13.77831 -13.58343 -13.38384 -13.15077 -12.88023 -12.52879 -12.38305 -12.27155 -12.10710 -11.84534 -11.16621 -10.84593 -10.61831 -9.52909 -8.26966 -8.20029 -6.33235 0.33383 0.60512 1.39051 1.40085 1.52139 2.38447 2.56476 2.80665 3.13311 3.44286 3.65502 3.82974 4.16055 4.24605 4.41719 4.53208 4.57811 4.77550 4.90162 5.04534 5.16097 5.28852 5.34657 5.40759 5.52756 5.58447 5.75424 5.90914 6.16337 6.30338 6.81956 7.05648 7.36197 8.90050 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047173 B = 0.006780 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.422589 B = 4128.976284 C = 4475.490709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.157 3.843 11 H 0.075 0.925 12 C -0.073 4.073 13 C -0.242 4.242 14 C 0.216 3.784 15 C -0.204 4.204 16 C -0.037 4.037 17 C -0.218 4.218 18 C 0.135 3.865 19 F -0.151 7.151 20 N -0.719 5.719 21 H 0.263 0.737 22 H 0.004 0.996 23 H -0.011 1.011 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -11.990 5.692 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.084 0.916 9 C -0.017 4.017 10 C 0.052 3.948 11 H 0.093 0.907 12 C -0.111 4.111 13 C -0.248 4.248 14 C 0.109 3.891 15 C -0.227 4.227 16 C -0.056 4.056 17 C -0.239 4.239 18 C 0.115 3.885 19 F -0.129 7.129 20 N -0.347 5.347 21 H 0.071 0.929 22 H 0.022 0.978 23 H 0.007 0.993 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.159 0.841 27 H 0.188 0.812 28 H 0.173 0.827 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.701 -11.777 5.493 14.621 hybrid contribution -0.161 1.358 -0.300 1.400 sum 6.541 -10.419 5.193 13.353 Atomic orbital electron populations 1.70109 1.07928 1.27678 1.51686 1.25955 0.95642 1.03334 0.94809 0.85395 0.79212 0.78896 0.77489 1.18244 1.20712 1.20842 1.21554 0.93467 0.91619 1.50269 0.91643 1.19409 0.94041 0.93052 0.95181 1.21404 0.93597 0.94147 0.85629 0.90704 1.21019 1.00558 0.93870 0.95642 1.20008 1.07941 0.96079 1.00799 1.18533 0.91973 0.86007 0.92606 1.20730 1.07524 0.98964 0.95476 1.20977 0.93597 0.91588 0.99421 1.21062 1.05206 1.03507 0.94143 1.17289 0.92263 0.87818 0.91124 1.91421 1.70582 1.74832 1.76108 1.44995 1.53019 1.15857 1.20828 0.92857 0.97788 0.99297 0.89076 0.91444 0.84107 0.81241 0.82716 0.74463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.94 15 2 C 0.00 0.03 5.46 84.66 0.46 0.49 15 3 Si 0.97 43.19 29.54 68.60 2.03 45.21 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.53 -28.75 8.96 25.60 0.23 -28.52 15 8 H 0.07 3.33 7.74 -2.91 -0.02 3.31 15 9 C 0.02 1.09 4.46 29.85 0.13 1.22 15 10 C 0.16 6.43 3.61 45.24 0.16 6.60 15 11 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 12 C -0.07 -2.73 6.58 30.26 0.20 -2.54 15 13 C -0.24 -8.60 6.21 -19.59 -0.12 -8.72 15 14 C 0.22 7.37 7.03 38.33 0.27 7.64 15 15 C -0.20 -5.45 10.07 22.53 0.23 -5.22 15 16 C -0.04 -0.82 10.02 22.18 0.22 -0.60 15 17 C -0.22 -5.43 10.04 22.33 0.22 -5.21 15 18 C 0.13 4.29 7.29 22.36 0.16 4.45 15 19 F -0.15 -4.89 17.26 44.97 0.78 -4.12 15 20 N -0.72 -26.60 6.01 -317.41 -1.91 -28.50 15 21 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 22 H 0.00 0.22 8.14 -2.38 -0.02 0.20 15 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 24 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 25 H 0.07 2.67 7.71 -2.39 -0.02 2.65 15 26 H 0.14 3.12 8.06 -2.91 -0.02 3.09 15 27 H 0.17 2.29 8.06 -2.91 -0.02 2.26 15 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 15 29 H 0.42 14.55 8.96 -92.71 -0.83 13.72 15 Total: -1.00 -63.60 256.60 3.68 -59.92 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.33 Total: 13.85 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 2.17 Total: -30.41 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.62 Total: -84.44 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -63.60 3.68 -59.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381532.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.190 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds