Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.26400 * 54.29791 * 10 9 7 12 12 C 1.53747 * 110.29908 * 176.36755 * 10 9 7 13 13 C 1.51216 * 104.53382 * 118.92692 * 12 10 9 14 14 C 1.38599 * 108.54376 * 359.97438 * 13 12 10 15 15 C 1.39659 * 119.04075 * 179.97438 * 14 13 12 16 16 C 1.37881 * 120.33417 * 0.04652 * 15 14 13 17 17 C 1.38221 * 120.26189 * 359.95060 * 16 15 14 18 18 C 1.38343 * 130.99183 * 180.02562 * 13 12 10 19 19 F 1.35099 * 119.95095 * 0.02562 * 18 13 12 20 20 N 1.39780 * 111.67652 * 0.05297 * 14 13 12 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.09000 * 110.42088 * 237.68859 * 12 10 9 25 25 H 1.09004 * 110.42341 * 0.04038 * 12 10 9 26 26 H 1.07998 * 119.83202 * 180.02562 * 15 14 13 27 27 H 1.08001 * 119.87076 * 179.97438 * 16 15 14 28 28 H 1.07994 * 120.10213 * 180.02562 * 17 16 15 29 29 H 0.97002 * 125.06870 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9443 -3.5612 0.8298 12 6 1.4983 -5.0027 0.0908 13 6 1.8700 -5.7317 -1.1808 14 6 2.7213 -4.9246 -1.9188 15 6 3.2032 -5.3894 -3.1444 16 6 2.8346 -6.6334 -3.6110 17 6 1.9852 -7.4322 -2.8688 18 6 1.5020 -6.9792 -1.6523 19 9 0.6702 -7.7567 -0.9251 20 7 2.9702 -3.7101 -1.2731 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 1.8315 -5.5651 0.9630 25 1 0.4219 -4.8361 0.1352 26 1 3.8676 -4.7712 -3.7299 27 1 3.2114 -6.9853 -4.5601 28 1 1.6985 -8.4063 -3.2365 29 1 3.5383 -3.0027 -1.6162 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381536.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -30.510624 kcal Electronic energy + Delta-G solvation = -14422.299066 eV Core-core repulsion = 11837.880950 eV Total energy + Delta-G solvation = -2584.418116 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.59143 -39.90684 -36.29867 -33.31048 -31.36734 -30.03262 -28.39285 -26.47447 -23.21969 -21.97263 -21.27578 -20.40557 -17.70286 -16.91485 -16.19970 -15.48588 -15.39830 -14.83386 -14.55330 -13.95175 -13.69391 -13.02610 -12.76790 -12.55328 -12.05135 -11.91548 -11.48073 -11.19151 -10.99210 -10.88288 -10.57565 -10.53361 -10.16944 -9.53269 -8.66297 -8.42914 -8.36290 -6.96952 -6.45095 -4.15878 1.48249 1.74192 3.37506 3.40254 3.55851 3.84850 3.95180 4.46346 4.60745 4.87976 5.10080 5.22273 5.33182 5.53634 5.65125 5.68209 5.70871 6.18427 6.26050 6.28746 6.42358 6.55178 6.61743 6.62608 6.95690 7.19544 7.31707 7.59988 8.05091 8.33753 8.35363 8.77481 9.56782 10.95456 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.006841 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.338755 B = 4091.715879 C = 4444.633948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.048 0.952 9 C -0.001 4.001 10 C 0.155 3.845 11 H 0.070 0.930 12 C -0.077 4.077 13 C -0.218 4.218 14 C 0.239 3.761 15 C -0.206 4.206 16 C -0.047 4.047 17 C -0.228 4.228 18 C 0.154 3.846 19 F -0.145 7.145 20 N -0.711 5.711 21 H 0.270 0.730 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -11.442 -4.353 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.039 4.039 10 C 0.050 3.950 11 H 0.088 0.912 12 C -0.114 4.114 13 C -0.224 4.224 14 C 0.130 3.870 15 C -0.229 4.229 16 C -0.066 4.066 17 C -0.249 4.249 18 C 0.134 3.866 19 F -0.124 7.124 20 N -0.337 5.337 21 H 0.080 0.920 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.414 -9.669 -4.150 11.833 hybrid contribution 0.243 -1.459 -0.044 1.480 sum 5.657 -11.128 -4.194 13.169 Atomic orbital electron populations 1.70753 1.06926 1.30727 1.46112 1.25837 0.96523 1.02748 0.93665 0.83505 0.74588 0.75157 0.76779 1.21420 1.20983 1.21556 1.21950 0.94047 0.91802 1.56341 0.93351 1.19687 0.94393 0.92959 0.96823 1.21547 0.93854 0.94645 0.84919 0.91186 1.21121 1.01532 0.94558 0.94189 1.19861 1.06433 0.95269 1.00844 1.18302 0.91025 0.86419 0.91254 1.20345 1.07817 0.98367 0.96408 1.20477 0.95095 0.92685 0.98354 1.20637 1.06070 1.02482 0.95738 1.16977 0.91288 0.87836 0.90453 1.91440 1.69521 1.74188 1.77224 1.45189 1.51697 1.15292 1.21542 0.91986 0.96255 0.96689 0.90670 0.89980 0.86185 0.85514 0.85488 0.74520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 13.65 55.43 0.76 -26.65 15 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 15 3 Si 1.07 24.70 29.90 -169.99 -5.08 19.61 15 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.29 -6.30 7.11 56.52 0.40 -5.89 15 7 C -0.60 -16.30 8.90 -34.44 -0.31 -16.61 15 8 H 0.05 1.27 7.74 -52.48 -0.41 0.86 15 9 C 0.00 -0.02 3.78 -27.88 -0.11 -0.13 15 10 C 0.15 3.12 3.62 -67.52 -0.24 2.88 15 11 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 12 C -0.08 -1.39 6.58 -27.24 -0.18 -1.57 15 13 C -0.22 -3.89 6.21 -104.20 -0.65 -4.54 15 14 C 0.24 4.21 7.03 -83.57 -0.59 3.62 15 15 C -0.21 -3.05 10.07 -39.18 -0.39 -3.45 15 16 C -0.05 -0.62 10.02 -39.72 -0.40 -1.02 15 17 C -0.23 -3.20 10.04 -39.49 -0.40 -3.60 15 18 C 0.15 2.55 7.29 -39.44 -0.29 2.26 15 19 F -0.15 -2.39 17.26 2.25 0.04 -2.36 15 20 N -0.71 -13.33 6.00 -51.62 -0.31 -13.64 15 21 H 0.27 8.12 7.22 -40.82 -0.29 7.82 15 22 H 0.02 0.50 8.01 -51.93 -0.42 0.08 15 23 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 15 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.08 1.52 7.71 -51.93 -0.40 1.12 15 26 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.42 7.50 8.93 -40.82 -0.36 7.13 15 LS Contribution 255.20 15.07 3.85 3.85 Total: -1.00 -29.70 255.20 -7.60 -37.31 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.21 Total: 3.66 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.64 Total: -21.78 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.45 Total: -40.29 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.70 -7.60 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381536.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.795 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds