Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.26400 * 54.29791 * 10 9 7 12 12 C 1.53747 * 110.29908 * 176.36755 * 10 9 7 13 13 C 1.51216 * 104.53382 * 118.92692 * 12 10 9 14 14 C 1.38599 * 108.54376 * 359.97438 * 13 12 10 15 15 C 1.39659 * 119.04075 * 179.97438 * 14 13 12 16 16 C 1.37881 * 120.33417 * 0.04652 * 15 14 13 17 17 C 1.38221 * 120.26189 * 359.95060 * 16 15 14 18 18 C 1.38343 * 130.99183 * 180.02562 * 13 12 10 19 19 F 1.35099 * 119.95095 * 0.02562 * 18 13 12 20 20 N 1.39780 * 111.67652 * 0.05297 * 14 13 12 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.09000 * 110.42088 * 237.68859 * 12 10 9 25 25 H 1.09004 * 110.42341 * 0.04038 * 12 10 9 26 26 H 1.07998 * 119.83202 * 180.02562 * 15 14 13 27 27 H 1.08001 * 119.87076 * 179.97438 * 16 15 14 28 28 H 1.07994 * 120.10213 * 180.02562 * 17 16 15 29 29 H 0.97002 * 125.06870 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9443 -3.5612 0.8298 12 6 1.4983 -5.0027 0.0908 13 6 1.8700 -5.7317 -1.1808 14 6 2.7213 -4.9246 -1.9188 15 6 3.2032 -5.3894 -3.1444 16 6 2.8346 -6.6334 -3.6110 17 6 1.9852 -7.4322 -2.8688 18 6 1.5020 -6.9792 -1.6523 19 9 0.6702 -7.7567 -0.9251 20 7 2.9702 -3.7101 -1.2731 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 1.8315 -5.5651 0.9630 25 1 0.4219 -4.8361 0.1352 26 1 3.8676 -4.7712 -3.7299 27 1 3.2114 -6.9853 -4.5601 28 1 1.6985 -8.4063 -3.2365 29 1 3.5383 -3.0027 -1.6162 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381536.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -48.081167 kcal Electronic energy + Delta-G solvation = -14423.060982 eV Core-core repulsion = 11837.880950 eV Total energy + Delta-G solvation = -2585.180032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.85081 -41.24727 -37.68519 -35.32281 -32.71637 -31.65921 -29.67937 -28.19271 -25.16757 -23.26139 -22.55620 -22.03151 -19.09254 -18.89324 -17.52957 -16.73823 -16.62962 -16.18052 -15.96588 -15.70288 -15.28567 -14.96706 -14.14743 -13.81700 -13.65561 -13.38417 -13.04992 -12.76800 -12.52997 -12.35786 -12.27027 -12.16752 -11.93743 -10.96812 -10.70629 -10.58741 -9.59174 -8.70400 -8.33394 -6.41446 0.27218 0.53889 1.51704 1.60269 1.76989 2.46745 2.55295 2.74332 3.15902 3.37927 3.56689 3.72439 4.10343 4.10840 4.33903 4.45985 4.49609 4.64292 4.79572 4.87203 5.05257 5.10970 5.24525 5.27811 5.41554 5.49915 5.79020 5.94401 6.14296 6.21484 6.53211 6.96812 7.40864 8.70284 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.006841 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.338755 B = 4091.715879 C = 4444.633948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.040 4.040 3 Si 1.121 2.879 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.606 4.606 8 H 0.057 0.943 9 C 0.005 3.995 10 C 0.164 3.836 11 H 0.073 0.927 12 C -0.073 4.073 13 C -0.242 4.242 14 C 0.214 3.786 15 C -0.202 4.202 16 C -0.036 4.036 17 C -0.216 4.216 18 C 0.135 3.865 19 F -0.150 7.150 20 N -0.720 5.720 21 H 0.254 0.746 22 H 0.000 1.000 23 H -0.015 1.015 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.172 0.828 28 H 0.157 0.843 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -12.433 -5.841 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.644 4.644 8 H 0.075 0.925 9 C -0.033 4.033 10 C 0.058 3.942 11 H 0.091 0.909 12 C -0.111 4.111 13 C -0.248 4.248 14 C 0.107 3.893 15 C -0.225 4.225 16 C -0.055 4.055 17 C -0.237 4.237 18 C 0.116 3.884 19 F -0.129 7.129 20 N -0.349 5.349 21 H 0.063 0.937 22 H 0.018 0.982 23 H 0.003 0.997 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.159 0.841 27 H 0.189 0.811 28 H 0.175 0.825 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.259 -10.713 -5.650 14.121 hybrid contribution -0.342 -1.283 0.346 1.372 sum 6.917 -11.997 -5.305 14.829 Atomic orbital electron populations 1.70894 1.08167 1.29817 1.48843 1.27408 0.96524 1.06933 0.92815 0.82883 0.74216 0.70988 0.77694 1.19949 1.21340 1.19008 1.22336 0.94639 0.92655 1.54778 0.92495 1.19577 0.94745 0.94589 0.94381 1.21241 0.93036 0.93769 0.86145 0.90945 1.21013 1.00394 0.93918 0.95759 1.19976 1.07623 0.96335 1.00898 1.18585 0.92156 0.85993 0.92565 1.20745 1.07305 0.99286 0.95206 1.20999 0.93598 0.91394 0.99490 1.21090 1.04703 1.03616 0.94252 1.17280 0.91954 0.87618 0.91571 1.91426 1.69755 1.74133 1.77555 1.45010 1.52237 1.16251 1.21378 0.93659 0.98205 0.99686 0.88990 0.91417 0.84090 0.81080 0.82537 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.65 21.45 0.29 -57.99 15 2 C -0.04 -2.25 5.46 84.65 0.46 -1.79 15 3 Si 1.12 49.33 29.90 68.60 2.05 51.38 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 7 C -0.61 -33.24 8.90 25.60 0.23 -33.02 15 8 H 0.06 2.97 7.74 -2.91 -0.02 2.94 15 9 C 0.00 0.26 3.78 29.85 0.11 0.37 15 10 C 0.16 6.74 3.62 45.24 0.16 6.91 15 11 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 12 C -0.07 -2.72 6.58 30.26 0.20 -2.52 15 13 C -0.24 -8.56 6.21 -19.59 -0.12 -8.68 15 14 C 0.21 7.31 7.03 38.30 0.27 7.58 15 15 C -0.20 -5.40 10.07 22.53 0.23 -5.17 15 16 C -0.04 -0.79 10.02 22.18 0.22 -0.57 15 17 C -0.22 -5.28 10.04 22.33 0.22 -5.06 15 18 C 0.14 4.26 7.29 22.36 0.16 4.43 15 19 F -0.15 -4.81 17.26 44.97 0.78 -4.03 15 20 N -0.72 -27.01 6.00 -317.23 -1.90 -28.91 15 21 H 0.25 16.07 7.22 -92.71 -0.67 15.40 15 22 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 15 23 H -0.02 -0.86 8.01 -2.39 -0.02 -0.88 15 24 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.07 2.64 7.71 -2.39 -0.02 2.62 15 26 H 0.14 3.13 8.06 -2.91 -0.02 3.11 15 27 H 0.17 2.25 8.06 -2.91 -0.02 2.22 15 28 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 29 H 0.42 14.93 8.93 -92.71 -0.83 14.10 15 Total: -1.00 -65.23 255.20 3.80 -61.42 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.44 Total: 15.66 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 2.15 Total: -37.53 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -1.61 Total: -86.90 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.03 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Total: -65.23 3.80 -61.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381536.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.344 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds