Wall clock time and date at job start Mon Mar 30 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40035 * 110.99815 * 2 1 4 4 C 1.39434 * 129.93365 * 75.99317 * 3 2 1 5 5 C 1.37912 * 120.25420 * 180.09326 * 4 3 2 6 6 C 1.38267 * 120.29403 * 0.43834 * 5 4 3 7 7 C 1.38530 * 119.85401 * 359.65991 * 6 5 4 8 8 F 1.35102 * 119.98858 * 180.02562 * 7 6 5 9 9 C 1.38138 * 120.02692 * 0.02562 * 7 6 5 10 10 C 1.51571 * 131.56559 * 180.32866 * 9 7 6 11 11 C 1.47897 * 111.00234 * 239.98725 * 2 1 3 12 12 H 1.08997 * 110.78003 * 336.20408 * 11 2 1 13 13 C 1.50699 * 110.77861 * 212.96220 * 11 2 1 14 14 H 1.08002 * 120.00171 * 241.45018 * 13 11 2 15 15 C 1.37879 * 120.00081 * 61.45345 * 13 11 2 16 16 N 1.31511 * 119.99806 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00263 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.47014 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47083 * 119.99712 * 17 15 13 20 20 H 1.48500 * 109.47479 * 240.00049 * 17 15 13 21 21 H 1.09008 * 109.47229 * 60.12773 * 1 2 3 22 22 H 1.09001 * 109.47260 * 180.12857 * 1 2 3 23 23 H 1.09004 * 109.47436 * 300.12383 * 1 2 3 24 24 H 1.07999 * 119.87036 * 0.25818 * 4 3 2 25 25 H 1.08000 * 119.85132 * 180.23152 * 5 4 3 26 26 H 1.08006 * 120.07103 * 179.63940 * 6 5 4 27 27 H 1.09001 * 110.73951 * 45.38411 * 10 9 7 28 28 H 1.08994 * 110.89881 * 282.12232 * 10 9 7 29 29 H 0.96998 * 119.99973 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9707 1.3074 0.0000 4 6 2.0499 2.2357 1.0374 5 6 2.5877 3.4854 0.8119 6 6 3.0445 3.8315 -0.4464 7 6 2.9681 2.9164 -1.4836 8 9 3.4141 3.2515 -2.7140 9 6 2.4360 1.6613 -1.2602 10 6 2.2348 0.4757 -2.1828 11 6 1.9990 -0.6906 -1.1956 12 1 1.2671 -1.3944 -1.5919 13 6 3.2943 -1.3921 -0.8774 14 1 4.2013 -1.1108 -1.3918 15 6 3.3214 -2.3932 0.0703 16 7 2.2168 -2.7362 0.6962 17 14 4.9267 -3.2633 0.4642 18 1 6.0152 -2.6962 -0.3718 19 1 5.2546 -3.0712 1.8997 20 1 4.7868 -4.7138 0.1781 21 1 -0.3634 0.5119 -0.8912 22 1 -0.3634 -1.0277 0.0023 23 1 -0.3634 0.5158 0.8889 24 1 1.6911 1.9740 2.0218 25 1 2.6492 4.1981 1.6211 26 1 3.4597 4.8133 -0.6203 27 1 3.1268 0.2983 -2.7836 28 1 1.3640 0.6233 -2.8214 29 1 2.2359 -3.4402 1.3632 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:15 Heat of formation + Delta-G solvation = -3.986202 kcal Electronic energy + Delta-G solvation = -14992.166475 eV Core-core repulsion = 12408.898544 eV Total energy + Delta-G solvation = -2583.267931 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.33399 -39.79848 -36.05078 -32.46593 -31.35746 -29.05073 -28.38794 -25.39288 -24.51114 -21.61216 -20.90608 -19.97224 -16.98830 -16.46699 -15.63650 -15.25033 -15.09814 -14.49674 -14.10306 -13.87948 -13.45161 -12.70215 -12.40084 -12.21258 -12.11056 -11.43886 -11.35618 -11.06800 -10.80391 -10.71820 -10.64687 -10.58004 -9.70546 -9.23815 -8.60942 -8.50352 -8.06047 -6.86197 -6.01447 -4.12067 1.77598 1.84180 3.29324 3.37909 3.42252 4.14939 4.41984 4.63895 4.87128 5.27746 5.34639 5.40900 5.72823 5.84905 5.96868 6.11210 6.17169 6.21173 6.34965 6.51411 6.61882 6.66435 6.73540 6.85595 6.95769 7.22779 7.41078 7.85564 8.06487 8.25107 8.42140 8.93101 9.56588 11.05218 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030150 B = 0.010308 C = 0.009638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.472184 B = 2715.614687 C = 2904.425836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.463 5.463 3 C 0.161 3.839 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.195 4.195 7 C 0.119 3.881 8 F -0.150 7.150 9 C -0.175 4.175 10 C -0.102 4.102 11 C 0.218 3.782 12 H 0.053 0.947 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.083 3.917 16 N -0.859 5.859 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.012 0.988 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 8.619 -0.754 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.178 5.178 3 C 0.061 3.939 4 C -0.165 4.165 5 C -0.100 4.100 6 C -0.214 4.214 7 C 0.100 3.900 8 F -0.129 7.129 9 C -0.179 4.179 10 C -0.140 4.140 11 C 0.114 3.886 12 H 0.070 0.930 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.123 4.123 16 N -0.495 5.495 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.031 0.969 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.081 8.126 -0.211 8.391 hybrid contribution 0.843 -0.024 -0.431 0.947 sum -1.238 8.102 -0.642 8.221 Atomic orbital electron populations 1.22232 0.87452 1.02073 0.98634 1.60495 1.05725 1.07234 1.44354 1.19831 0.93557 0.89375 0.91123 1.20524 1.04444 0.93212 0.98346 1.20569 0.97678 0.95980 0.95815 1.20758 1.07990 0.99660 0.93028 1.17127 0.99607 0.93277 0.80026 1.91417 1.87293 1.92876 1.41290 1.21240 1.04811 0.94106 0.97792 1.21834 1.01001 0.93203 0.97956 1.20317 0.96604 0.89489 0.82160 0.92952 1.20957 0.93680 1.17792 1.23523 0.92212 1.24935 0.96027 0.96103 0.95215 1.70001 1.26484 1.28637 1.24354 0.86602 0.84150 0.79274 0.78325 1.19737 1.20926 1.20953 0.96901 0.90618 0.92930 0.86002 0.85669 0.85673 0.90354 0.92330 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.29 60.06 0.56 1.39 15 2 N -0.46 -10.91 4.47 -170.66 -0.76 -11.67 15 3 C 0.16 3.49 5.54 -83.41 -0.46 3.03 15 4 C -0.14 -2.69 10.07 -39.26 -0.40 -3.08 15 5 C -0.08 -1.30 10.02 -39.69 -0.40 -1.69 15 6 C -0.19 -3.23 10.04 -39.46 -0.40 -3.62 15 7 C 0.12 2.32 7.29 -39.51 -0.29 2.03 15 8 F -0.15 -2.86 17.27 2.25 0.04 -2.82 15 9 C -0.18 -3.76 6.20 -103.98 -0.64 -4.40 15 10 C -0.10 -2.21 6.50 -26.61 -0.17 -2.38 15 11 C 0.22 5.37 2.53 -67.47 -0.17 5.20 15 12 H 0.05 1.34 7.76 -51.93 -0.40 0.93 15 13 C -0.52 -14.27 8.74 -34.44 -0.30 -14.57 15 14 H 0.06 1.65 7.59 -52.49 -0.40 1.25 15 15 C 0.08 2.29 5.41 -17.82 -0.10 2.20 15 16 N -0.86 -24.14 12.89 55.43 0.71 -23.43 15 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 21 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 15 22 H 0.08 1.55 8.11 -51.93 -0.42 1.13 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.12 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 26 H 0.13 1.71 8.06 -52.48 -0.42 1.29 15 27 H 0.08 1.71 7.76 -51.93 -0.40 1.31 15 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.26 6.93 8.31 -40.82 -0.34 6.60 15 LS Contribution 255.23 15.07 3.85 3.85 Total: -1.00 -28.91 255.23 -7.25 -36.16 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.30 Total: -2.41 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.77 Total: -15.91 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.10 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.91 -7.25 -36.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.173 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds