Wall clock time and date at job start Mon Mar 30 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40035 * 110.99815 * 2 1 4 4 C 1.39434 * 129.93365 * 75.99317 * 3 2 1 5 5 C 1.37912 * 120.25420 * 180.09326 * 4 3 2 6 6 C 1.38267 * 120.29403 * 0.43834 * 5 4 3 7 7 C 1.38530 * 119.85401 * 359.65991 * 6 5 4 8 8 F 1.35102 * 119.98858 * 180.02562 * 7 6 5 9 9 C 1.38138 * 120.02692 * 0.02562 * 7 6 5 10 10 C 1.51571 * 131.56559 * 180.32866 * 9 7 6 11 11 C 1.47897 * 111.00234 * 239.98725 * 2 1 3 12 12 H 1.08997 * 110.78003 * 336.20408 * 11 2 1 13 13 C 1.50699 * 110.77861 * 212.96220 * 11 2 1 14 14 H 1.08002 * 120.00171 * 241.45018 * 13 11 2 15 15 C 1.37879 * 120.00081 * 61.45345 * 13 11 2 16 16 N 1.31511 * 119.99806 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00263 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.47014 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47083 * 119.99712 * 17 15 13 20 20 H 1.48500 * 109.47479 * 240.00049 * 17 15 13 21 21 H 1.09008 * 109.47229 * 60.12773 * 1 2 3 22 22 H 1.09001 * 109.47260 * 180.12857 * 1 2 3 23 23 H 1.09004 * 109.47436 * 300.12383 * 1 2 3 24 24 H 1.07999 * 119.87036 * 0.25818 * 4 3 2 25 25 H 1.08000 * 119.85132 * 180.23152 * 5 4 3 26 26 H 1.08006 * 120.07103 * 179.63940 * 6 5 4 27 27 H 1.09001 * 110.73951 * 45.38411 * 10 9 7 28 28 H 1.08994 * 110.89881 * 282.12232 * 10 9 7 29 29 H 0.96998 * 119.99973 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9707 1.3074 0.0000 4 6 2.0499 2.2357 1.0374 5 6 2.5877 3.4854 0.8119 6 6 3.0445 3.8315 -0.4464 7 6 2.9681 2.9164 -1.4836 8 9 3.4141 3.2515 -2.7140 9 6 2.4360 1.6613 -1.2602 10 6 2.2348 0.4757 -2.1828 11 6 1.9990 -0.6906 -1.1956 12 1 1.2671 -1.3944 -1.5919 13 6 3.2943 -1.3921 -0.8774 14 1 4.2013 -1.1108 -1.3918 15 6 3.3214 -2.3932 0.0703 16 7 2.2168 -2.7362 0.6962 17 14 4.9267 -3.2633 0.4642 18 1 6.0152 -2.6962 -0.3718 19 1 5.2546 -3.0712 1.8997 20 1 4.7868 -4.7138 0.1781 21 1 -0.3634 0.5119 -0.8912 22 1 -0.3634 -1.0277 0.0023 23 1 -0.3634 0.5158 0.8889 24 1 1.6911 1.9740 2.0218 25 1 2.6492 4.1981 1.6211 26 1 3.4597 4.8133 -0.6203 27 1 3.1268 0.2983 -2.7836 28 1 1.3640 0.6233 -2.8214 29 1 2.2359 -3.4402 1.3632 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:15 Heat of formation + Delta-G solvation = -20.580261 kcal Electronic energy + Delta-G solvation = -14992.886047 eV Core-core repulsion = 12408.898544 eV Total energy + Delta-G solvation = -2583.987503 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.80719 -41.38879 -37.57827 -34.48772 -32.97205 -30.53879 -30.07463 -27.18218 -26.23743 -23.25680 -22.37494 -21.66758 -18.88224 -18.02931 -17.22208 -16.75862 -16.59196 -16.37668 -15.76113 -15.47348 -15.05411 -14.32847 -14.12557 -13.78477 -13.74972 -13.07376 -12.95404 -12.76395 -12.60137 -12.50357 -12.32479 -12.14876 -11.59008 -11.20481 -10.59747 -10.13642 -9.52054 -8.52506 -8.06305 -6.25508 0.32186 0.41458 1.39345 1.42126 1.52482 2.42877 2.71549 2.96328 3.36068 3.47462 3.74012 4.03920 4.20451 4.42886 4.47953 4.50703 4.55043 4.66804 4.79222 4.92388 5.00751 5.13436 5.20748 5.30438 5.46190 5.60089 5.73870 5.97750 6.15817 6.43448 6.71769 6.88103 7.45613 8.97554 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030150 B = 0.010308 C = 0.009638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.472184 B = 2715.614687 C = 2904.425836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.487 5.487 3 C 0.129 3.871 4 C -0.149 4.149 5 C -0.063 4.063 6 C -0.180 4.180 7 C 0.104 3.896 8 F -0.152 7.152 9 C -0.202 4.202 10 C -0.095 4.095 11 C 0.215 3.785 12 H 0.030 0.970 13 C -0.540 4.540 14 H 0.046 0.954 15 C 0.040 3.960 16 N -0.884 5.884 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.275 1.275 21 H 0.023 0.977 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.134 0.866 25 H 0.174 0.826 26 H 0.163 0.837 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 10.652 0.326 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.202 5.202 3 C 0.030 3.970 4 C -0.170 4.170 5 C -0.082 4.082 6 C -0.199 4.199 7 C 0.085 3.915 8 F -0.131 7.131 9 C -0.206 4.206 10 C -0.133 4.133 11 C 0.111 3.889 12 H 0.048 0.952 13 C -0.579 4.579 14 H 0.065 0.935 15 C -0.164 4.164 16 N -0.520 5.520 17 Si 0.774 3.226 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.200 1.200 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.152 0.848 25 H 0.192 0.808 26 H 0.180 0.820 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.465 10.171 0.863 10.312 hybrid contribution 0.633 -0.549 -0.774 1.141 sum -0.833 9.622 0.089 9.658 Atomic orbital electron populations 1.22196 0.86096 1.01495 1.00043 1.60285 1.07299 1.08847 1.43750 1.20059 0.95252 0.89341 0.92359 1.20847 1.04389 0.93705 0.98024 1.21090 0.94902 0.95382 0.96786 1.21238 1.06132 1.00368 0.92180 1.17417 1.00013 0.93268 0.80832 1.91409 1.87339 1.92772 1.41598 1.21260 1.06788 0.94907 0.97651 1.21655 1.01006 0.93048 0.97637 1.20091 0.95060 0.90136 0.83662 0.95163 1.21186 0.94305 1.18691 1.23697 0.93549 1.25600 0.98925 0.96734 0.95128 1.70099 1.27986 1.29134 1.24796 0.85675 0.80524 0.78508 0.77854 1.19820 1.20722 1.20027 0.95858 0.92178 0.90953 0.84822 0.80827 0.81971 0.91497 0.91046 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.90 9.29 127.69 1.19 3.09 15 2 N -0.49 -23.19 4.47 -693.84 -3.10 -26.30 15 3 C 0.13 5.50 5.54 38.28 0.21 5.71 15 4 C -0.15 -5.14 10.07 22.48 0.23 -4.92 15 5 C -0.06 -1.71 10.02 22.20 0.22 -1.49 15 6 C -0.18 -5.20 10.04 22.35 0.22 -4.98 15 7 C 0.10 3.85 7.29 22.32 0.16 4.01 15 8 F -0.15 -5.60 17.27 44.97 0.78 -4.82 15 9 C -0.20 -8.58 6.20 -19.45 -0.12 -8.70 15 10 C -0.10 -4.25 6.50 30.67 0.20 -4.05 15 11 C 0.21 10.97 2.53 44.52 0.11 11.09 15 12 H 0.03 1.63 7.76 -2.39 -0.02 1.62 15 13 C -0.54 -30.45 8.74 25.60 0.22 -30.23 15 14 H 0.05 2.65 7.59 -2.91 -0.02 2.63 15 15 C 0.04 2.22 5.41 84.66 0.46 2.68 15 16 N -0.88 -50.54 12.89 21.45 0.28 -50.26 15 17 Si 0.95 44.10 29.54 68.60 2.03 46.13 15 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 21 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 22 H 0.06 2.55 8.11 -2.39 -0.02 2.53 15 23 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.13 4.22 8.06 -2.91 -0.02 4.19 15 25 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.16 3.50 8.06 -2.91 -0.02 3.48 15 27 H 0.07 3.04 7.76 -2.39 -0.02 3.02 15 28 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 29 H 0.26 14.10 8.31 -92.71 -0.77 13.33 15 Total: -1.00 -62.88 255.23 4.22 -58.65 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.14 Total: 4.38 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 3.11 Total: -27.78 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.83 Total: -76.56 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.88 4.22 -58.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.074 kcal (2) G-P(sol) polarization free energy of solvation -62.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds