Wall clock time and date at job start Mon Mar 30 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48402 * 111.00761 * 2 1 4 4 C 1.54606 * 102.39809 * 94.53081 * 3 2 1 5 5 H 1.09000 * 110.73863 * 143.99516 * 4 3 2 6 6 C 1.50697 * 110.74025 * 267.14689 * 4 3 2 7 7 H 1.07991 * 120.00449 * 357.22649 * 6 4 3 8 8 C 1.37885 * 119.99686 * 177.50480 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 4 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 C 1.51570 * 102.98822 * 25.57133 * 4 3 2 15 15 C 1.38959 * 107.96791 * 343.95230 * 14 4 3 16 16 C 1.39385 * 119.10677 * 179.59760 * 15 14 4 17 17 C 1.37965 * 120.24711 * 0.24938 * 16 15 14 18 18 C 1.38223 * 120.29629 * 359.97438 * 17 16 15 19 19 C 1.38098 * 131.56312 * 163.91777 * 14 4 3 20 20 F 1.35095 * 119.98718 * 0.26146 * 19 14 4 21 21 H 1.08996 * 109.47014 * 300.10176 * 1 2 3 22 22 H 1.08998 * 109.47185 * 60.10384 * 1 2 3 23 23 H 1.09000 * 109.47125 * 180.10370 * 1 2 3 24 24 H 1.09001 * 110.93351 * 336.30517 * 3 2 1 25 25 H 1.08997 * 110.84087 * 212.71643 * 3 2 1 26 26 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 27 27 H 1.07997 * 119.87419 * 180.25218 * 16 15 14 28 28 H 1.08000 * 119.84955 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.07532 * 179.85271 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0010 1.3854 0.0000 4 6 2.2313 1.6525 1.5053 5 1 3.1222 2.2619 1.6572 6 6 1.0244 2.3121 2.1211 7 1 0.1770 2.5714 1.5039 8 6 1.0044 2.5898 3.4715 9 7 2.0364 2.2740 4.2231 10 14 -0.4885 3.4144 4.2334 11 1 -1.5064 3.6647 3.1817 12 1 -1.0631 2.5297 5.2785 13 1 -0.0824 4.7049 4.8458 14 6 2.4300 0.2607 2.0717 15 6 1.9709 -0.6541 1.1320 16 6 2.0529 -2.0164 1.4155 17 6 2.5788 -2.4459 2.6164 18 6 3.0291 -1.5294 3.5480 19 6 2.9534 -0.1731 3.2738 20 9 3.3928 0.7250 4.1823 21 1 -0.3633 0.5154 0.8890 22 1 -0.3633 0.5122 -0.8909 23 1 -0.3633 -1.0277 0.0019 24 1 1.2703 2.0831 -0.4091 25 1 2.9401 1.4401 -0.5506 26 1 2.0222 2.4690 5.1732 27 1 1.7035 -2.7383 0.6923 28 1 2.6390 -3.5029 2.8296 29 1 3.4380 -1.8694 4.4880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384068.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:03 Heat of formation + Delta-G solvation = 16.907784 kcal Electronic energy + Delta-G solvation = -15438.288771 eV Core-core repulsion = 12855.926871 eV Total energy + Delta-G solvation = -2582.361900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.07414 -39.67689 -35.81560 -33.07200 -30.61692 -28.88555 -28.05129 -25.92282 -23.79800 -21.93785 -20.48363 -19.62323 -16.95003 -15.85936 -15.59624 -14.84963 -14.57257 -14.31094 -13.94089 -13.68677 -13.23280 -12.58881 -12.17673 -11.89866 -11.58641 -11.21469 -11.08998 -11.03560 -10.93112 -10.64389 -10.50903 -10.32524 -9.67911 -9.47370 -8.48599 -8.43118 -7.39603 -7.09603 -5.92519 -4.15590 2.10489 2.28545 3.24656 3.33259 3.35337 4.33657 4.43836 4.66837 5.21859 5.50441 5.67806 5.75912 5.82031 6.00825 6.06574 6.16809 6.32125 6.38390 6.49051 6.60634 6.63367 6.98169 7.10500 7.22139 7.27783 7.54046 7.60023 7.77005 7.91116 8.10623 8.24723 8.82820 9.49199 10.97218 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.014970 C = 0.011316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.309892 B = 1869.915072 C = 2473.778602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.495 5.495 3 C 0.049 3.951 4 C 0.060 3.940 5 H 0.045 0.955 6 C -0.522 4.522 7 H 0.061 0.939 8 C 0.062 3.938 9 N -0.853 5.853 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.283 1.283 14 C -0.115 4.115 15 C 0.095 3.905 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.198 4.198 19 C 0.156 3.844 20 F -0.093 7.093 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.262 0.738 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -5.659 -3.572 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.213 5.213 3 C -0.077 4.077 4 C 0.040 3.960 5 H 0.063 0.937 6 C -0.559 4.559 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.489 5.489 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.209 1.209 14 C -0.119 4.119 15 C -0.002 4.002 16 C -0.166 4.166 17 C -0.122 4.122 18 C -0.218 4.218 19 C 0.135 3.865 20 F -0.070 7.070 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.062 -5.837 -3.852 6.994 hybrid contribution -1.037 0.878 1.466 1.999 sum -0.976 -4.959 -2.386 5.589 Atomic orbital electron populations 1.22424 0.86449 1.01177 1.01797 1.60490 1.08146 1.15720 1.36920 1.23318 0.99062 0.86884 0.98465 1.18873 0.98573 0.89339 0.89179 0.93721 1.20940 1.01392 1.40014 0.93559 0.92080 1.25193 0.96341 0.95197 0.97537 1.70511 1.28273 1.43944 1.06148 0.86588 0.83056 0.79321 0.79395 1.19826 1.21072 1.20868 1.21625 0.98485 0.99072 0.92705 1.19439 0.98191 0.92802 0.89720 1.20210 1.05582 0.92968 0.97837 1.20394 1.00038 0.98325 0.93440 1.20990 1.07706 0.91964 1.01145 1.17140 0.96341 0.85853 0.87182 1.91681 1.85451 1.65556 1.64359 0.92797 0.92009 0.92527 0.90584 0.91530 0.92787 0.87011 0.86424 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.26 60.06 0.56 1.07 15 2 N -0.50 -10.10 5.34 -176.44 -0.94 -11.04 15 3 C 0.05 1.03 6.59 -2.15 -0.01 1.01 15 4 C 0.06 1.48 2.92 -91.65 -0.27 1.22 15 5 H 0.04 1.21 8.14 -51.93 -0.42 0.78 15 6 C -0.52 -13.88 7.36 -34.44 -0.25 -14.13 15 7 H 0.06 1.60 7.23 -52.49 -0.38 1.22 15 8 C 0.06 1.69 5.34 -17.82 -0.10 1.60 15 9 N -0.85 -24.03 8.36 55.43 0.46 -23.57 15 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 15 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 14 C -0.12 -2.81 5.24 -103.98 -0.54 -3.36 15 15 C 0.09 2.06 5.59 -83.41 -0.47 1.59 15 16 C -0.15 -2.77 10.07 -39.25 -0.40 -3.17 15 17 C -0.10 -1.85 10.02 -39.69 -0.40 -2.25 15 18 C -0.20 -4.02 10.04 -39.46 -0.40 -4.41 15 19 C 0.16 3.77 6.87 -39.51 -0.27 3.49 15 20 F -0.09 -2.44 13.13 2.25 0.03 -2.41 15 21 H 0.05 1.13 6.54 -51.93 -0.34 0.79 15 22 H 0.06 0.99 8.11 -51.93 -0.42 0.57 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.08 1.50 7.41 -51.93 -0.38 1.12 15 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.11 1.84 8.06 -52.49 -0.42 1.41 15 28 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 29 H 0.12 2.11 8.06 -52.49 -0.42 1.69 15 LS Contribution 243.17 15.07 3.66 3.66 Total: -1.00 -28.73 243.17 -7.55 -36.28 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.20 Total: -1.68 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.54 Total: -17.33 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.48 Total: -34.61 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.73 -7.55 -36.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384068.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.185 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds