Wall clock time and date at job start Mon Mar 30 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48402 * 111.00761 * 2 1 4 4 C 1.54606 * 102.39809 * 94.53081 * 3 2 1 5 5 H 1.09000 * 110.73863 * 143.99516 * 4 3 2 6 6 C 1.50697 * 110.74025 * 267.14689 * 4 3 2 7 7 H 1.07991 * 120.00449 * 357.22649 * 6 4 3 8 8 C 1.37885 * 119.99686 * 177.50480 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 4 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 C 1.51570 * 102.98822 * 25.57133 * 4 3 2 15 15 C 1.38959 * 107.96791 * 343.95230 * 14 4 3 16 16 C 1.39385 * 119.10677 * 179.59760 * 15 14 4 17 17 C 1.37965 * 120.24711 * 0.24938 * 16 15 14 18 18 C 1.38223 * 120.29629 * 359.97438 * 17 16 15 19 19 C 1.38098 * 131.56312 * 163.91777 * 14 4 3 20 20 F 1.35095 * 119.98718 * 0.26146 * 19 14 4 21 21 H 1.08996 * 109.47014 * 300.10176 * 1 2 3 22 22 H 1.08998 * 109.47185 * 60.10384 * 1 2 3 23 23 H 1.09000 * 109.47125 * 180.10370 * 1 2 3 24 24 H 1.09001 * 110.93351 * 336.30517 * 3 2 1 25 25 H 1.08997 * 110.84087 * 212.71643 * 3 2 1 26 26 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 27 27 H 1.07997 * 119.87419 * 180.25218 * 16 15 14 28 28 H 1.08000 * 119.84955 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.07532 * 179.85271 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0010 1.3854 0.0000 4 6 2.2313 1.6525 1.5053 5 1 3.1222 2.2619 1.6572 6 6 1.0244 2.3121 2.1211 7 1 0.1770 2.5714 1.5039 8 6 1.0044 2.5898 3.4715 9 7 2.0364 2.2740 4.2231 10 14 -0.4885 3.4144 4.2334 11 1 -1.5064 3.6647 3.1817 12 1 -1.0631 2.5297 5.2785 13 1 -0.0824 4.7049 4.8458 14 6 2.4300 0.2607 2.0717 15 6 1.9709 -0.6541 1.1320 16 6 2.0529 -2.0164 1.4155 17 6 2.5788 -2.4459 2.6164 18 6 3.0291 -1.5294 3.5480 19 6 2.9534 -0.1731 3.2738 20 9 3.3928 0.7250 4.1823 21 1 -0.3633 0.5154 0.8890 22 1 -0.3633 0.5122 -0.8909 23 1 -0.3633 -1.0277 0.0019 24 1 1.2703 2.0831 -0.4091 25 1 2.9401 1.4401 -0.5506 26 1 2.0222 2.4690 5.1732 27 1 1.7035 -2.7383 0.6923 28 1 2.6390 -3.5029 2.8296 29 1 3.4380 -1.8694 4.4880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384068.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:03 Heat of formation + Delta-G solvation = -0.314411 kcal Electronic energy + Delta-G solvation = -15439.035581 eV Core-core repulsion = 12855.926871 eV Total energy + Delta-G solvation = -2583.108710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.92915 -41.32069 -37.40064 -35.02071 -32.40252 -30.46717 -29.74190 -27.68724 -25.55122 -23.59794 -22.11654 -21.36454 -18.89347 -17.60772 -17.26955 -16.54383 -16.39764 -16.01696 -15.72645 -15.33432 -14.87602 -14.40944 -13.82619 -13.60971 -13.29002 -12.94021 -12.79954 -12.71618 -12.62719 -12.42536 -12.24849 -12.06100 -11.47591 -11.34094 -10.53649 -10.09873 -9.09786 -8.75221 -7.95277 -6.25443 0.48967 0.66837 1.34723 1.37167 1.46979 2.37776 2.81638 3.05273 3.17499 3.93056 4.16266 4.20915 4.26663 4.47218 4.50162 4.67474 4.73894 4.81806 4.92090 5.00245 5.08996 5.35304 5.46573 5.55962 5.61197 5.72694 5.74877 5.98525 6.15630 6.24342 6.52573 6.78841 7.40865 8.91194 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.014970 C = 0.011316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.309892 B = 1869.915072 C = 2473.778602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.488 5.488 3 C 0.057 3.943 4 C 0.050 3.950 5 H 0.004 0.996 6 C -0.528 4.528 7 H 0.061 0.939 8 C 0.011 3.989 9 N -0.876 5.876 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.281 1.281 14 C -0.154 4.154 15 C 0.084 3.916 16 C -0.139 4.139 17 C -0.085 4.085 18 C -0.198 4.198 19 C 0.112 3.888 20 F -0.118 7.118 21 H 0.022 0.978 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.256 0.744 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -7.851 -4.540 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.205 5.205 3 C -0.070 4.070 4 C 0.030 3.970 5 H 0.022 0.978 6 C -0.566 4.566 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.513 5.513 10 Si 0.775 3.225 11 H -0.189 1.189 12 H -0.213 1.213 13 H -0.207 1.207 14 C -0.157 4.157 15 C -0.012 4.012 16 C -0.159 4.159 17 C -0.103 4.103 18 C -0.218 4.218 19 C 0.092 3.908 20 F -0.096 7.096 21 H 0.041 0.959 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.073 -8.030 -4.838 9.436 hybrid contribution -0.648 1.483 1.730 2.369 sum -1.720 -6.547 -3.108 7.449 Atomic orbital electron populations 1.22493 0.85169 1.02569 1.01468 1.60612 1.09157 1.14707 1.36035 1.23247 1.00075 0.87822 0.95813 1.18845 0.96267 0.89722 0.92119 0.97783 1.21190 1.01801 1.39869 0.93722 0.92133 1.25933 0.98846 0.96076 0.98234 1.70718 1.29799 1.44935 1.05837 0.85652 0.80221 0.78184 0.78492 1.18867 1.21338 1.20707 1.21681 1.00905 0.99120 0.94040 1.19792 0.98221 0.93800 0.89411 1.20686 1.04192 0.92203 0.98788 1.20965 0.97096 1.00297 0.91930 1.21324 1.07247 0.90508 1.02696 1.17742 0.98427 0.87313 0.87346 1.91600 1.86105 1.66799 1.65140 0.95900 0.89570 0.90270 0.89704 0.90312 0.93397 0.83412 0.81390 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.26 127.69 1.18 2.18 15 2 N -0.49 -18.99 5.34 -712.14 -3.80 -22.79 15 3 C 0.06 2.38 6.59 86.56 0.57 2.95 15 4 C 0.05 2.57 2.92 -11.46 -0.03 2.54 15 5 H 0.00 0.24 8.14 -2.39 -0.02 0.22 15 6 C -0.53 -28.82 7.36 25.60 0.19 -28.64 15 7 H 0.06 3.21 7.23 -2.92 -0.02 3.19 15 8 C 0.01 0.62 5.34 84.66 0.45 1.07 15 9 N -0.88 -51.39 8.36 21.45 0.18 -51.21 15 10 Si 0.95 44.18 29.54 68.60 2.03 46.21 15 11 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 12 H -0.29 -13.38 7.11 99.48 0.71 -12.68 15 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 14 C -0.15 -7.62 5.24 -19.45 -0.10 -7.72 15 15 C 0.08 3.51 5.59 38.28 0.21 3.72 15 16 C -0.14 -4.73 10.07 22.48 0.23 -4.50 15 17 C -0.08 -2.68 10.02 22.20 0.22 -2.46 15 18 C -0.20 -7.68 10.04 22.35 0.22 -7.45 15 19 C 0.11 5.52 6.87 22.32 0.15 5.68 15 20 F -0.12 -6.52 13.13 44.97 0.59 -5.93 15 21 H 0.02 0.92 6.54 -2.39 -0.02 0.91 15 22 H 0.09 2.52 8.11 -2.39 -0.02 2.50 15 23 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.08 3.31 7.41 -2.39 -0.02 3.29 15 25 H 0.08 3.02 8.14 -2.39 -0.02 3.00 15 26 H 0.26 14.59 8.31 -92.71 -0.77 13.81 15 27 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 28 H 0.17 3.67 8.06 -2.91 -0.02 3.65 15 29 H 0.14 4.68 8.06 -2.91 -0.02 4.66 15 Total: -1.00 -64.24 243.17 3.44 -60.80 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.15 Total: 5.56 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.30 Total: -32.64 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -3.62 Total: -74.00 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.59 Total: -5.93 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.24 3.44 -60.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384068.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.484 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds