Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48196 * 110.84191 * 2 1 4 4 C 1.54601 * 102.48936 * 94.72146 * 3 2 1 5 5 H 1.09005 * 110.73597 * 266.89590 * 4 3 2 6 6 C 1.50695 * 110.74312 * 143.75306 * 4 3 2 7 7 H 1.08006 * 119.99783 * 278.32629 * 6 4 3 8 8 C 1.37875 * 120.00691 * 98.33411 * 6 4 3 9 9 N 1.31517 * 119.99285 * 354.43226 * 8 6 4 10 10 Si 1.86794 * 120.00398 * 174.43475 * 8 6 4 11 11 H 1.48504 * 109.47048 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47421 * 299.99714 * 10 8 6 13 13 H 1.48500 * 109.46969 * 59.99773 * 10 8 6 14 14 C 1.51567 * 102.99720 * 25.31935 * 4 3 2 15 15 C 1.38967 * 107.95844 * 344.14685 * 14 4 3 16 16 C 1.39382 * 119.10334 * 179.60471 * 15 14 4 17 17 C 1.37964 * 120.25252 * 0.24235 * 16 15 14 18 18 C 1.38216 * 120.28951 * 359.97438 * 17 16 15 19 19 C 1.38087 * 131.57498 * 164.10217 * 14 4 3 20 20 F 1.35104 * 119.98672 * 0.28239 * 19 14 4 21 21 H 1.08997 * 109.47183 * 300.13263 * 1 2 3 22 22 H 1.09001 * 109.46922 * 60.13889 * 1 2 3 23 23 H 1.09005 * 109.46937 * 180.13432 * 1 2 3 24 24 H 1.08993 * 110.95061 * 336.43306 * 3 2 1 25 25 H 1.09001 * 110.73922 * 212.90822 * 3 2 1 26 26 H 0.97001 * 119.99636 * 180.02562 * 9 8 6 27 27 H 1.08008 * 119.87269 * 180.27190 * 16 15 14 28 28 H 1.08000 * 119.85250 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.07079 * 179.87740 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9962 1.3850 0.0000 4 6 2.2313 1.6532 1.5043 5 1 1.3601 2.1319 1.9517 6 6 3.4644 2.4946 1.7101 7 1 4.4405 2.0322 1.7064 8 6 3.3468 3.8547 1.9032 9 7 2.1708 4.4343 1.7992 10 14 4.8576 4.8741 2.3126 11 1 4.4662 6.2980 2.4698 12 1 5.4582 4.3828 3.5787 13 1 5.8495 4.7522 1.2142 14 6 2.4298 0.2619 2.0717 15 6 1.9709 -0.6535 1.1323 16 6 2.0527 -2.0155 1.4166 17 6 2.5784 -2.4445 2.6179 18 6 3.0285 -1.5275 3.5489 19 6 2.9531 -0.1714 3.2739 20 9 3.3922 0.7272 4.1822 21 1 -0.3633 0.5159 0.8888 22 1 -0.3633 0.5117 -0.8912 23 1 -0.3633 -1.0277 0.0024 24 1 1.2629 2.0812 -0.4070 25 1 2.9334 1.4412 -0.5538 26 1 2.0881 5.3912 1.9347 27 1 1.7037 -2.7380 0.6935 28 1 2.6391 -3.5014 2.8314 29 1 3.4376 -1.8671 4.4890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384074.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -7.330466 kcal Electronic energy + Delta-G solvation = -15001.578903 eV Core-core repulsion = 12418.165954 eV Total energy + Delta-G solvation = -2583.412949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.89229 -39.88479 -36.05913 -33.22824 -30.94105 -29.19192 -28.13093 -25.89200 -23.96064 -22.21667 -20.73306 -19.90967 -16.77676 -16.45473 -15.67333 -15.28772 -14.67829 -14.51132 -14.41912 -13.92508 -13.58222 -12.84467 -12.35464 -12.18780 -11.80747 -11.54237 -11.37272 -11.29052 -10.95942 -10.66120 -10.59091 -10.54570 -9.54548 -9.40733 -8.89673 -8.51213 -7.89557 -7.29672 -6.13234 -4.15395 1.75399 1.89564 3.30472 3.34163 3.39075 4.13183 4.39060 4.41434 5.04382 5.15995 5.37366 5.47960 5.60320 5.73908 5.88927 6.01466 6.06130 6.18641 6.22753 6.52288 6.63559 6.77263 6.83878 7.01096 7.09617 7.32301 7.48615 7.61506 7.81626 7.89341 8.22670 8.88689 9.48568 10.96338 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.011679 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.418418 B = 2396.943777 C = 3098.554718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.505 5.505 3 C 0.055 3.945 4 C 0.055 3.945 5 H 0.074 0.926 6 C -0.504 4.504 7 H 0.057 0.943 8 C 0.068 3.932 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.286 1.286 12 H -0.274 1.274 13 H -0.275 1.275 14 C -0.136 4.136 15 C 0.104 3.896 16 C -0.135 4.135 17 C -0.099 4.099 18 C -0.181 4.181 19 C 0.130 3.870 20 F -0.133 7.133 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.264 0.736 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -9.593 -0.218 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.223 5.223 3 C -0.071 4.071 4 C 0.036 3.964 5 H 0.092 0.908 6 C -0.542 4.542 7 H 0.075 0.925 8 C -0.134 4.134 9 N -0.530 5.530 10 Si 0.723 3.277 11 H -0.212 1.212 12 H -0.199 1.199 13 H -0.200 1.200 14 C -0.140 4.140 15 C 0.008 3.992 16 C -0.155 4.155 17 C -0.118 4.118 18 C -0.201 4.201 19 C 0.110 3.890 20 F -0.112 7.112 21 H 0.051 0.949 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.979 -9.594 -0.697 9.821 hybrid contribution 0.656 1.158 1.051 1.696 sum -1.323 -8.437 0.354 8.547 Atomic orbital electron populations 1.22368 0.86602 1.01347 1.01155 1.60473 1.07673 1.17753 1.36364 1.23584 0.99617 0.83932 0.99971 1.19001 0.99715 0.87086 0.90596 0.90840 1.20752 0.91766 0.91717 1.49921 0.92457 1.24975 0.96193 0.97956 0.94301 1.69908 1.23129 1.10988 1.48988 0.86583 0.82949 0.78827 0.79332 1.21181 1.19938 1.20043 1.21947 0.99217 1.00401 0.92386 1.19532 0.97380 0.92768 0.89554 1.20383 1.04287 0.93108 0.97730 1.20497 0.99366 0.98713 0.93178 1.20957 1.06376 0.91262 1.01460 1.17125 0.98532 0.86074 0.87274 1.91491 1.86856 1.67462 1.65348 0.94885 0.91202 0.92022 0.90918 0.90098 0.92602 0.86327 0.85701 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.28 60.06 0.56 1.08 15 2 N -0.51 -9.98 5.34 -176.62 -0.94 -10.92 15 3 C 0.05 1.23 6.54 -2.27 -0.01 1.21 15 4 C 0.06 1.40 3.02 -91.66 -0.28 1.12 15 5 H 0.07 2.05 7.46 -51.93 -0.39 1.67 15 6 C -0.50 -13.93 7.79 -34.44 -0.27 -14.20 15 7 H 0.06 1.62 7.82 -52.48 -0.41 1.21 15 8 C 0.07 1.90 5.45 -17.82 -0.10 1.80 15 9 N -0.89 -25.52 12.88 55.43 0.71 -24.81 15 10 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 15 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 C -0.14 -3.12 5.64 -103.98 -0.59 -3.70 15 15 C 0.10 2.10 5.59 -83.41 -0.47 1.63 15 16 C -0.13 -2.26 10.07 -39.26 -0.40 -2.66 15 17 C -0.10 -1.51 10.02 -39.69 -0.40 -1.91 15 18 C -0.18 -3.14 10.04 -39.47 -0.40 -3.53 15 19 C 0.13 2.81 7.21 -39.51 -0.29 2.53 15 20 F -0.13 -3.14 16.79 2.25 0.04 -3.10 15 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.07 1.03 8.11 -51.93 -0.42 0.61 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.07 1.59 7.77 -51.93 -0.40 1.19 15 25 H 0.08 1.86 7.91 -51.93 -0.41 1.45 15 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.12 1.69 8.06 -52.48 -0.42 1.26 15 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.13 1.84 8.06 -52.49 -0.42 1.41 15 LS Contribution 254.35 15.07 3.83 3.83 Total: -1.00 -29.19 254.35 -7.29 -36.47 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.28 Total: -1.38 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.63 Total: -16.63 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.23 Total: -35.73 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.19 -7.29 -36.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384074.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.144 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds