Wall clock time and date at job start Mon Mar 30 2020 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48089 * 110.99862 * 2 1 4 4 C 1.51041 * 105.71557 * 268.06169 * 3 2 1 5 5 N 1.31869 * 132.54962 * 162.89919 * 4 3 2 6 6 C 1.33496 * 120.68356 * 180.20412 * 5 4 3 7 7 C 1.41582 * 119.18998 * 179.71671 * 6 5 4 8 8 H 1.08002 * 120.00394 * 359.73445 * 7 6 5 9 9 C 1.40064 * 119.99631 * 179.45178 * 7 6 5 10 10 N 1.30684 * 120.00299 * 0.27965 * 9 7 6 11 11 Si 1.86803 * 119.99770 * 180.27391 * 9 7 6 12 12 H 1.48504 * 109.47118 * 60.00509 * 11 9 7 13 13 H 1.48498 * 109.47326 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00615 * 11 9 7 15 15 N 1.33472 * 121.61545 * 359.43808 * 6 5 4 16 16 C 1.32490 * 120.58556 * 0.28578 * 15 6 5 17 17 O 1.35512 * 120.53942 * 180.02562 * 16 15 6 18 18 C 1.38804 * 108.15213 * 342.58837 * 4 3 2 19 19 C 1.48110 * 110.99572 * 244.90000 * 2 1 3 20 20 H 1.08995 * 109.47782 * 175.10217 * 1 2 3 21 21 H 1.09011 * 109.47144 * 295.09995 * 1 2 3 22 22 H 1.09000 * 109.47484 * 55.09611 * 1 2 3 23 23 H 1.08999 * 110.20341 * 27.12564 * 3 2 1 24 24 H 1.09006 * 110.19392 * 148.92897 * 3 2 1 25 25 H 0.97005 * 120.00035 * 179.97438 * 10 9 7 26 26 H 0.96697 * 114.00649 * 89.99743 * 17 16 15 27 27 H 1.09000 * 110.21122 * 332.91010 * 19 2 1 28 28 H 1.09000 * 110.20528 * 211.01427 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3825 0.0000 4 6 2.1922 1.7469 -1.4531 5 7 2.3516 2.9018 -2.0693 6 6 2.5012 2.9516 -3.3950 7 6 2.6641 4.2092 -4.0246 8 1 2.6621 5.1133 -3.4338 9 6 2.8338 4.2804 -5.4131 10 7 2.8363 3.1864 -6.1281 11 14 3.0565 5.9391 -6.2430 12 1 4.2666 6.6063 -5.6991 13 1 3.2144 5.7431 -7.7065 14 1 1.8651 6.7865 -5.9833 15 7 2.5063 1.8447 -4.1406 16 6 2.3559 0.6536 -3.5802 17 8 2.3618 -0.4697 -4.3381 18 6 2.1922 0.5747 -2.1965 19 6 1.9997 -0.5866 -1.2522 20 1 -0.3634 -1.0238 -0.0877 21 1 -0.3634 0.4360 0.9307 22 1 -0.3634 0.5880 -0.8428 23 1 1.2846 2.0602 0.4664 24 1 2.9526 1.4198 0.5280 25 1 2.9535 3.2358 -7.0897 26 1 3.2388 -0.8590 -4.4577 27 1 1.2844 -1.2959 -1.6685 28 1 2.9530 -1.0797 -1.0624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:09 Heat of formation + Delta-G solvation = 23.065880 kcal Electronic energy + Delta-G solvation = -14867.006802 eV Core-core repulsion = 12304.831899 eV Total energy + Delta-G solvation = -2562.174903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98580 -37.34996 -36.30978 -33.65309 -31.27402 -30.33515 -27.90961 -27.29007 -25.09190 -22.22962 -21.35102 -20.50229 -17.92465 -17.21829 -16.39672 -15.22082 -15.00604 -14.64728 -14.38843 -13.72812 -13.15399 -12.87772 -12.47998 -12.30106 -11.62736 -11.54148 -11.44460 -11.27963 -11.12384 -11.03420 -10.62278 -10.38231 -9.46501 -9.18633 -8.83739 -8.31163 -7.86170 -7.52220 -6.64945 -4.85301 2.37059 2.64668 2.99890 3.02832 3.04444 3.80255 4.38394 4.45744 4.84587 4.96134 5.40982 5.54900 5.65658 5.73319 5.89825 6.10519 6.12629 6.21219 6.32785 6.35538 6.65146 6.84459 6.97342 7.15437 7.31651 7.34195 7.99466 8.16863 8.43566 8.63587 8.91228 9.98994 10.13566 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045577 B = 0.008649 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.195475 B = 3236.688011 C = 3689.587585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.509 5.509 3 C 0.092 3.908 4 C 0.167 3.833 5 N -0.582 5.582 6 C 0.408 3.592 7 C -0.392 4.392 8 H 0.097 0.903 9 C 0.063 3.937 10 N -0.704 5.704 11 Si 0.923 3.077 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.262 1.262 15 N -0.520 5.520 16 C 0.382 3.618 17 O -0.493 6.493 18 C -0.404 4.404 19 C 0.117 3.883 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.030 0.970 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.278 0.722 26 H 0.387 0.613 27 H 0.062 0.938 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -3.422 4.367 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.230 5.230 3 C -0.037 4.037 4 C 0.011 3.989 5 N -0.302 5.302 6 C 0.173 3.827 7 C -0.426 4.426 8 H 0.115 0.885 9 C -0.165 4.165 10 N -0.325 5.325 11 Si 0.746 3.254 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.186 1.186 15 N -0.247 5.247 16 C 0.187 3.813 17 O -0.298 6.298 18 C -0.417 4.417 19 C -0.012 4.012 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.242 0.758 27 H 0.080 0.920 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.629 -2.820 4.073 4.994 hybrid contribution 0.153 0.088 -0.918 0.935 sum -0.476 -2.732 3.155 4.201 Atomic orbital electron populations 1.22541 0.88447 1.01639 1.00843 1.65336 1.08288 1.14492 1.34887 1.21495 1.01379 0.89396 0.91435 1.22075 0.91516 0.89186 0.96095 1.67927 1.23529 1.26994 1.11784 1.19729 0.88526 0.91589 0.82861 1.19391 1.40049 0.91581 0.91603 0.88478 1.26163 0.93807 0.98864 0.97670 1.70134 1.26463 1.28705 1.07240 0.86129 0.80208 0.81053 0.78010 1.18582 1.20011 1.18610 1.69026 1.21089 0.96616 1.37980 1.19110 0.91302 0.86585 0.84270 1.84607 1.33572 1.38271 1.73388 1.21785 1.26743 0.98253 0.94918 1.20991 0.99343 0.94643 0.86250 0.91501 0.91538 0.95076 0.90232 0.88511 0.91040 0.75770 0.91962 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.16 60.06 0.55 0.77 15 2 N -0.51 -8.72 5.78 -243.37 -1.41 -10.13 15 3 C 0.09 1.70 6.64 -4.15 -0.03 1.67 15 4 C 0.17 3.92 7.39 -82.20 -0.61 3.32 15 5 N -0.58 -15.59 10.36 -8.83 -0.09 -15.68 15 6 C 0.41 11.65 7.37 -158.26 -1.17 10.48 15 7 C -0.39 -10.65 9.37 -37.62 -0.35 -11.01 15 8 H 0.10 2.50 7.85 -52.49 -0.41 2.09 15 9 C 0.06 1.57 5.50 -17.36 -0.10 1.48 15 10 N -0.70 -18.56 11.42 55.55 0.63 -17.93 15 11 Si 0.92 18.23 29.56 -169.99 -5.02 13.21 15 12 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 13 H -0.28 -5.26 7.11 56.52 0.40 -4.85 15 14 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 15 N -0.52 -14.72 7.90 -12.74 -0.10 -14.82 15 16 C 0.38 9.60 7.84 -16.78 -0.13 9.47 15 17 O -0.49 -10.68 13.58 -18.23 -0.25 -10.93 15 18 C -0.40 -9.27 6.25 -103.82 -0.65 -9.92 15 19 C 0.12 2.15 6.65 -4.21 -0.03 2.12 15 20 H 0.07 0.90 8.09 -51.93 -0.42 0.48 15 21 H 0.07 0.87 8.14 -51.92 -0.42 0.45 15 22 H 0.03 0.54 8.07 -51.93 -0.42 0.12 15 23 H 0.08 1.36 7.80 -51.93 -0.41 0.96 15 24 H 0.10 1.64 8.14 -51.93 -0.42 1.21 15 25 H 0.28 6.60 8.29 -40.82 -0.34 6.26 15 26 H 0.39 6.33 9.06 45.56 0.41 6.74 15 27 H 0.06 1.10 7.76 -51.93 -0.40 0.70 15 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -31.50 247.41 -7.06 -38.56 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.05 Total: 5.62 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -2.51 Total: 8.38 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.96 Total: -58.56 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.25 Total: -10.93 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.50 -7.06 -38.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.630 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds