Wall clock time and date at job start Mon Mar 30 2020 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48089 * 110.99862 * 2 1 4 4 C 1.51041 * 105.71557 * 268.06169 * 3 2 1 5 5 N 1.31869 * 132.54962 * 162.89919 * 4 3 2 6 6 C 1.33496 * 120.68356 * 180.20412 * 5 4 3 7 7 C 1.41582 * 119.18998 * 179.71671 * 6 5 4 8 8 H 1.08002 * 120.00394 * 359.73445 * 7 6 5 9 9 C 1.40064 * 119.99631 * 179.45178 * 7 6 5 10 10 N 1.30684 * 120.00299 * 0.27965 * 9 7 6 11 11 Si 1.86803 * 119.99770 * 180.27391 * 9 7 6 12 12 H 1.48504 * 109.47118 * 60.00509 * 11 9 7 13 13 H 1.48498 * 109.47326 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00615 * 11 9 7 15 15 N 1.33472 * 121.61545 * 359.43808 * 6 5 4 16 16 C 1.32490 * 120.58556 * 0.28578 * 15 6 5 17 17 O 1.35512 * 120.53942 * 180.02562 * 16 15 6 18 18 C 1.38804 * 108.15213 * 342.58837 * 4 3 2 19 19 C 1.48110 * 110.99572 * 244.90000 * 2 1 3 20 20 H 1.08995 * 109.47782 * 175.10217 * 1 2 3 21 21 H 1.09011 * 109.47144 * 295.09995 * 1 2 3 22 22 H 1.09000 * 109.47484 * 55.09611 * 1 2 3 23 23 H 1.08999 * 110.20341 * 27.12564 * 3 2 1 24 24 H 1.09006 * 110.19392 * 148.92897 * 3 2 1 25 25 H 0.97005 * 120.00035 * 179.97438 * 10 9 7 26 26 H 0.96697 * 114.00649 * 89.99743 * 17 16 15 27 27 H 1.09000 * 110.21122 * 332.91010 * 19 2 1 28 28 H 1.09000 * 110.20528 * 211.01427 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3825 0.0000 4 6 2.1922 1.7469 -1.4531 5 7 2.3516 2.9018 -2.0693 6 6 2.5012 2.9516 -3.3950 7 6 2.6641 4.2092 -4.0246 8 1 2.6621 5.1133 -3.4338 9 6 2.8338 4.2804 -5.4131 10 7 2.8363 3.1864 -6.1281 11 14 3.0565 5.9391 -6.2430 12 1 4.2666 6.6063 -5.6991 13 1 3.2144 5.7431 -7.7065 14 1 1.8651 6.7865 -5.9833 15 7 2.5063 1.8447 -4.1406 16 6 2.3559 0.6536 -3.5802 17 8 2.3618 -0.4697 -4.3381 18 6 2.1922 0.5747 -2.1965 19 6 1.9997 -0.5866 -1.2522 20 1 -0.3634 -1.0238 -0.0877 21 1 -0.3634 0.4360 0.9307 22 1 -0.3634 0.5880 -0.8428 23 1 1.2846 2.0602 0.4664 24 1 2.9526 1.4198 0.5280 25 1 2.9535 3.2358 -7.0897 26 1 3.2388 -0.8590 -4.4577 27 1 1.2844 -1.2959 -1.6685 28 1 2.9530 -1.0797 -1.0624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:09 Heat of formation + Delta-G solvation = -4.031178 kcal Electronic energy + Delta-G solvation = -14868.181819 eV Core-core repulsion = 12304.831899 eV Total energy + Delta-G solvation = -2563.349920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.76406 -38.98614 -38.11809 -35.51743 -33.15866 -32.06047 -29.62038 -28.88744 -26.74600 -23.96151 -23.22638 -22.06207 -19.73446 -19.12602 -18.19933 -16.98096 -16.58325 -16.17941 -16.06703 -15.20906 -14.89089 -14.57860 -14.14293 -13.96063 -13.22772 -13.06818 -13.03562 -12.94242 -12.64975 -12.52379 -12.37384 -12.02398 -11.24819 -11.01893 -10.78944 -9.85506 -9.65286 -9.47618 -8.52311 -6.85413 0.49114 0.76497 1.37861 1.49501 1.53085 2.16004 2.59157 2.91919 3.14687 3.26621 3.66178 3.91336 4.21918 4.34331 4.39680 4.56258 4.70368 4.76239 4.91100 4.91930 4.95903 5.07908 5.16779 5.51383 5.66322 5.93318 6.02214 6.26908 6.51870 6.88367 6.98872 8.06056 8.26948 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045577 B = 0.008649 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.195475 B = 3236.688011 C = 3689.587585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.496 5.496 3 C 0.098 3.902 4 C 0.149 3.851 5 N -0.608 5.608 6 C 0.379 3.621 7 C -0.428 4.428 8 H 0.098 0.902 9 C 0.021 3.979 10 N -0.744 5.744 11 Si 1.005 2.995 12 H -0.254 1.254 13 H -0.262 1.262 14 H -0.257 1.257 15 N -0.558 5.558 16 C 0.364 3.636 17 O -0.493 6.493 18 C -0.404 4.404 19 C 0.123 3.877 20 H 0.088 0.912 21 H 0.092 0.908 22 H 0.002 0.998 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.286 0.714 26 H 0.409 0.591 27 H 0.073 0.927 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -3.769 5.267 6.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.217 5.217 3 C -0.031 4.031 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.142 3.858 7 C -0.462 4.462 8 H 0.116 0.884 9 C -0.203 4.203 10 N -0.365 5.365 11 Si 0.823 3.177 12 H -0.178 1.178 13 H -0.186 1.186 14 H -0.181 1.181 15 N -0.287 5.287 16 C 0.171 3.829 17 O -0.302 6.302 18 C -0.416 4.416 19 C -0.006 4.006 20 H 0.107 0.893 21 H 0.110 0.890 22 H 0.021 0.979 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.097 0.903 26 H 0.267 0.733 27 H 0.091 0.909 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.717 -3.234 5.005 6.002 hybrid contribution 0.153 0.035 -1.112 1.123 sum -0.564 -3.200 3.893 5.071 Atomic orbital electron populations 1.22683 0.87128 1.02812 1.00980 1.65413 1.09441 1.13290 1.33527 1.21665 1.02949 0.90206 0.88261 1.23023 0.90121 0.88598 0.98783 1.67966 1.24882 1.28716 1.11392 1.20174 0.89348 0.92370 0.83859 1.19770 1.41860 0.91475 0.93145 0.88428 1.27180 0.92517 1.03224 0.97389 1.70215 1.27083 1.31322 1.07903 0.84922 0.80333 0.75295 0.77108 1.17754 1.18640 1.18065 1.68975 1.22957 0.97631 1.39096 1.19462 0.91222 0.86646 0.85601 1.84547 1.35482 1.37045 1.73104 1.22289 1.24494 1.00205 0.94563 1.21081 1.00824 0.93134 0.85579 0.89329 0.88973 0.97935 0.88760 0.86558 0.90279 0.73262 0.90869 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.16 127.69 1.17 1.51 15 2 N -0.50 -15.41 5.78 -923.90 -5.34 -20.75 15 3 C 0.10 3.40 6.64 85.44 0.57 3.97 15 4 C 0.15 6.97 7.39 42.80 0.32 7.29 15 5 N -0.61 -33.34 10.36 -181.86 -1.88 -35.22 15 6 C 0.38 22.38 7.37 135.13 1.00 23.37 15 7 C -0.43 -24.08 9.37 23.54 0.22 -23.86 15 8 H 0.10 5.22 7.85 -2.91 -0.02 5.20 15 9 C 0.02 1.06 5.50 85.31 0.47 1.53 15 10 N -0.74 -40.17 11.42 21.84 0.25 -39.92 15 11 Si 1.01 37.53 29.56 68.60 2.03 39.56 15 12 H -0.25 -9.06 7.11 99.48 0.71 -8.36 15 13 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 15 N -0.56 -32.61 7.90 -307.04 -2.42 -35.04 15 16 C 0.36 18.50 7.84 84.91 0.67 19.16 15 17 O -0.49 -21.29 13.58 -88.14 -1.20 -22.48 15 18 C -0.40 -18.25 6.25 -19.35 -0.12 -18.37 15 19 C 0.12 4.20 6.65 85.39 0.57 4.77 15 20 H 0.09 2.06 8.09 -2.39 -0.02 2.04 15 21 H 0.09 2.07 8.14 -2.38 -0.02 2.05 15 22 H 0.00 0.06 8.07 -2.39 -0.02 0.04 15 23 H 0.09 3.00 7.80 -2.39 -0.02 2.98 15 24 H 0.12 3.60 8.14 -2.38 -0.02 3.58 15 25 H 0.29 13.80 8.29 -92.70 -0.77 13.03 15 26 H 0.41 13.13 9.06 -74.06 -0.67 12.46 15 27 H 0.07 2.38 7.76 -2.39 -0.02 2.36 15 28 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 Total: -1.00 -70.04 247.41 -3.19 -73.23 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.52 Total: 21.24 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 4.85 Total: 19.38 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -9.40 Total: -130.93 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.20 Total: -22.48 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -70.04 -3.19 -73.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.203 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds