Wall clock time and date at job start Mon Mar 30 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48498 * 109.46810 * 274.97910 * 3 2 1 5 5 H 1.48500 * 109.47315 * 34.98159 * 3 2 1 6 6 H 1.48500 * 109.46861 * 154.98337 * 3 2 1 7 7 C 1.40077 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99978 * 186.24297 * 7 2 1 9 9 C 1.41589 * 119.99870 * 6.24604 * 7 2 1 10 10 C 1.40633 * 120.58821 * 173.79875 * 9 7 2 11 11 C 1.39217 * 118.24518 * 180.02562 * 10 9 7 12 12 O 1.35539 * 120.39171 * 180.02562 * 11 10 9 13 13 N 1.32780 * 119.20601 * 359.97438 * 11 10 9 14 14 C 1.32694 * 121.13511 * 0.02562 * 13 11 10 15 15 N 1.38375 * 119.03156 * 179.72166 * 14 13 11 16 16 C 1.46504 * 119.99993 * 359.97438 * 15 14 13 17 17 C 1.53006 * 117.49737 * 223.75153 * 16 15 14 18 18 C 1.52998 * 117.49708 * 155.09337 * 16 15 14 19 19 N 1.32083 * 121.93493 * 359.97438 * 14 13 11 20 20 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.87372 * 0.04628 * 10 9 7 22 22 H 0.96696 * 113.99780 * 269.96880 * 12 11 10 23 23 H 0.96998 * 119.99827 * 179.97438 * 15 14 13 24 24 H 1.09003 * 115.54784 * 9.41703 * 16 15 14 25 25 H 1.08998 * 117.49666 * 359.97438 * 17 16 15 26 26 H 1.08994 * 117.49415 * 145.02219 * 17 16 15 27 27 H 1.09004 * 117.49206 * 214.97940 * 18 16 15 28 28 H 1.08999 * 117.50267 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3832 2.1070 -1.3948 5 1 1.4951 2.6200 0.8027 6 1 3.5872 1.4119 0.5921 7 6 2.0073 -1.2131 0.0005 8 1 3.0824 -1.2159 0.1022 9 6 1.3055 -2.4357 -0.1323 10 6 2.0023 -3.6502 -0.2637 11 6 1.2635 -4.8232 -0.3918 12 8 1.8905 -6.0179 -0.5206 13 7 -0.0626 -4.7575 -0.3852 14 6 -0.6915 -3.5958 -0.2595 15 7 -2.0751 -3.5773 -0.2639 16 6 -2.8240 -4.8283 -0.4066 17 6 -4.0233 -4.8293 -1.3567 18 6 -4.2457 -4.8688 0.1573 19 7 -0.0355 -2.4562 -0.1351 20 1 -0.4850 0.8401 -0.0004 21 1 3.0822 -3.6723 -0.2649 22 1 2.0731 -6.2695 -1.4362 23 1 -2.5491 -2.7360 -0.1725 24 1 -2.2312 -5.7409 -0.3434 25 1 -4.2553 -3.8991 -1.8752 26 1 -4.2198 -5.7427 -1.9181 27 1 -4.5884 -5.8082 0.5912 28 1 -4.6237 -3.9649 0.6348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:26 Heat of formation + Delta-G solvation = 36.827677 kcal Electronic energy + Delta-G solvation = -14456.490636 eV Core-core repulsion = 11894.912489 eV Total energy + Delta-G solvation = -2561.578147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16873 -37.30610 -36.25917 -34.04710 -32.22122 -30.91192 -28.58974 -26.23582 -22.24867 -22.11472 -22.01589 -20.51461 -18.46847 -17.19191 -16.15541 -15.65802 -15.04531 -14.62732 -14.26371 -13.84355 -13.43633 -12.99003 -12.84441 -12.20974 -11.49534 -11.45635 -11.30809 -10.96328 -10.93610 -10.64208 -10.28237 -10.06052 -9.72240 -8.98633 -8.78406 -8.49563 -7.46406 -6.82793 -6.50541 -4.81393 2.72725 2.77038 3.03690 3.07328 3.21269 3.84219 3.88950 4.26985 4.68700 4.83172 5.23252 5.34812 5.41541 5.85818 5.87699 6.03665 6.20723 6.33507 6.35244 6.66974 6.79117 7.02232 7.13504 7.27510 7.94376 8.09053 8.27978 8.37925 8.63878 8.84026 9.12530 10.11564 10.25163 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.009114 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.126822 B = 3071.609120 C = 4026.799457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.090 0.910 9 C 0.307 3.693 10 C -0.365 4.365 11 C 0.361 3.639 12 O -0.496 6.496 13 N -0.675 5.675 14 C 0.575 3.425 15 N -0.685 5.685 16 C 0.124 3.876 17 C -0.209 4.209 18 C -0.205 4.205 19 N -0.561 5.561 20 H 0.275 0.725 21 H 0.111 0.889 22 H 0.384 0.616 23 H 0.407 0.593 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -2.712 -2.098 4.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.157 4.157 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.453 4.453 8 H 0.108 0.892 9 C 0.177 3.823 10 C -0.395 4.395 11 C 0.182 3.818 12 O -0.301 6.301 13 N -0.415 5.415 14 C 0.217 3.783 15 N -0.322 5.322 16 C 0.016 3.984 17 C -0.249 4.249 18 C -0.244 4.244 19 N -0.289 5.289 20 H 0.086 0.914 21 H 0.129 0.871 22 H 0.239 0.761 23 H 0.244 0.756 24 H 0.154 0.846 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.501 -2.777 -1.485 5.493 hybrid contribution 1.004 0.913 -0.508 1.448 sum -3.497 -1.864 -1.992 4.436 Atomic orbital electron populations 1.70100 1.07368 1.28051 1.27275 1.26117 0.94932 1.01298 0.93329 0.86239 0.80578 0.80462 0.79155 1.19362 1.20015 1.18337 1.19651 0.94827 0.89030 1.41806 0.89208 1.18340 0.86679 0.91582 0.85663 1.22281 0.99985 0.93191 1.23994 1.18682 0.86602 0.83541 0.92989 1.84660 1.77191 1.36930 1.31300 1.66779 1.10387 1.29770 1.34585 1.18989 0.85723 0.85006 0.88631 1.43097 1.01203 1.07287 1.80641 1.21316 0.86233 0.90320 1.00573 1.23439 1.05848 1.02938 0.92640 1.23375 1.01708 1.03005 0.96303 1.68906 1.08885 1.23740 1.27405 0.91429 0.87095 0.76077 0.75623 0.84647 0.89081 0.88856 0.88687 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.11 11.55 55.55 0.64 -17.47 15 2 C 0.07 1.73 5.49 -17.35 -0.10 1.64 15 3 Si 0.91 17.92 29.56 -169.99 -5.03 12.89 15 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.42 -10.97 9.19 -37.62 -0.35 -11.32 15 8 H 0.09 2.19 7.85 -52.49 -0.41 1.77 15 9 C 0.31 8.45 6.57 -84.68 -0.56 7.90 15 10 C -0.36 -9.26 9.90 -38.31 -0.38 -9.64 15 11 C 0.36 8.82 7.83 -16.78 -0.13 8.69 15 12 O -0.50 -10.16 13.57 -18.31 -0.25 -10.41 15 13 N -0.67 -16.89 9.07 -14.07 -0.13 -17.02 15 14 C 0.58 14.62 8.42 -323.12 -2.72 11.90 15 15 N -0.68 -14.47 5.71 -55.85 -0.32 -14.79 15 16 C 0.12 2.18 6.44 -67.93 -0.44 1.74 15 17 C -0.21 -2.97 10.46 -26.69 -0.28 -3.25 15 18 C -0.20 -2.85 10.46 -26.69 -0.28 -3.13 15 19 N -0.56 -15.46 8.08 -11.93 -0.10 -15.55 15 20 H 0.27 6.33 8.29 -40.82 -0.34 5.99 15 21 H 0.11 2.60 8.06 -52.48 -0.42 2.17 15 22 H 0.38 5.74 9.06 45.56 0.41 6.15 15 23 H 0.41 8.27 8.94 -40.82 -0.36 7.91 15 24 H 0.14 2.55 7.28 -51.93 -0.38 2.18 15 25 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 LS Contribution 255.67 15.07 3.85 3.85 Total: -1.00 -30.41 255.67 -8.54 -38.95 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -1.99 Total: 15.01 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -5.22 Total: 4.54 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.10 Total: -64.83 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.25 Total: -10.41 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.41 -8.54 -38.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.774 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds