Wall clock time and date at job start Mon Mar 30 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48498 * 109.46810 * 274.97910 * 3 2 1 5 5 H 1.48500 * 109.47315 * 34.98159 * 3 2 1 6 6 H 1.48500 * 109.46861 * 154.98337 * 3 2 1 7 7 C 1.40077 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99978 * 186.24297 * 7 2 1 9 9 C 1.41589 * 119.99870 * 6.24604 * 7 2 1 10 10 C 1.40633 * 120.58821 * 173.79875 * 9 7 2 11 11 C 1.39217 * 118.24518 * 180.02562 * 10 9 7 12 12 O 1.35539 * 120.39171 * 180.02562 * 11 10 9 13 13 N 1.32780 * 119.20601 * 359.97438 * 11 10 9 14 14 C 1.32694 * 121.13511 * 0.02562 * 13 11 10 15 15 N 1.38375 * 119.03156 * 179.72166 * 14 13 11 16 16 C 1.46504 * 119.99993 * 359.97438 * 15 14 13 17 17 C 1.53006 * 117.49737 * 223.75153 * 16 15 14 18 18 C 1.52998 * 117.49708 * 155.09337 * 16 15 14 19 19 N 1.32083 * 121.93493 * 359.97438 * 14 13 11 20 20 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.87372 * 0.04628 * 10 9 7 22 22 H 0.96696 * 113.99780 * 269.96880 * 12 11 10 23 23 H 0.96998 * 119.99827 * 179.97438 * 15 14 13 24 24 H 1.09003 * 115.54784 * 9.41703 * 16 15 14 25 25 H 1.08998 * 117.49666 * 359.97438 * 17 16 15 26 26 H 1.08994 * 117.49415 * 145.02219 * 17 16 15 27 27 H 1.09004 * 117.49206 * 214.97940 * 18 16 15 28 28 H 1.08999 * 117.50267 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3832 2.1070 -1.3948 5 1 1.4951 2.6200 0.8027 6 1 3.5872 1.4119 0.5921 7 6 2.0073 -1.2131 0.0005 8 1 3.0824 -1.2159 0.1022 9 6 1.3055 -2.4357 -0.1323 10 6 2.0023 -3.6502 -0.2637 11 6 1.2635 -4.8232 -0.3918 12 8 1.8905 -6.0179 -0.5206 13 7 -0.0626 -4.7575 -0.3852 14 6 -0.6915 -3.5958 -0.2595 15 7 -2.0751 -3.5773 -0.2639 16 6 -2.8240 -4.8283 -0.4066 17 6 -4.0233 -4.8293 -1.3567 18 6 -4.2457 -4.8688 0.1573 19 7 -0.0355 -2.4562 -0.1351 20 1 -0.4850 0.8401 -0.0004 21 1 3.0822 -3.6723 -0.2649 22 1 2.0731 -6.2695 -1.4362 23 1 -2.5491 -2.7360 -0.1725 24 1 -2.2312 -5.7409 -0.3434 25 1 -4.2553 -3.8991 -1.8752 26 1 -4.2198 -5.7427 -1.9181 27 1 -4.5884 -5.8082 0.5912 28 1 -4.6237 -3.9649 0.6348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:26 Heat of formation + Delta-G solvation = 15.218022 kcal Electronic energy + Delta-G solvation = -14457.427701 eV Core-core repulsion = 11894.912489 eV Total energy + Delta-G solvation = -2562.515212 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02111 -38.76452 -37.92720 -35.86785 -33.91269 -32.80575 -30.42276 -28.15797 -24.05549 -23.82881 -23.19233 -22.10006 -20.23869 -19.03222 -17.77144 -17.42513 -16.73470 -16.22252 -15.94232 -15.57259 -15.08226 -14.74796 -14.55100 -13.56986 -13.20884 -13.11894 -12.71765 -12.50029 -12.43194 -12.34115 -11.89857 -11.48727 -11.31049 -10.88519 -10.50440 -10.37162 -9.38952 -8.56280 -8.36563 -6.78862 0.84870 0.95647 1.43414 1.57913 1.59031 2.20741 2.25732 2.79812 3.08134 3.11842 3.84916 3.94880 4.18302 4.23086 4.47424 4.54670 4.78444 4.83625 4.99958 5.11576 5.19690 5.25102 5.26623 5.55427 6.05710 6.32843 6.54382 6.62617 6.78369 7.02370 7.22679 8.25874 8.38160 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.009114 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.126822 B = 3071.609120 C = 4026.799457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.026 3.974 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.445 4.445 8 H 0.099 0.901 9 C 0.274 3.726 10 C -0.388 4.388 11 C 0.364 3.636 12 O -0.492 6.492 13 N -0.681 5.681 14 C 0.560 3.440 15 N -0.679 5.679 16 C 0.082 3.918 17 C -0.188 4.188 18 C -0.178 4.178 19 N -0.591 5.591 20 H 0.284 0.716 21 H 0.122 0.878 22 H 0.410 0.590 23 H 0.408 0.592 24 H 0.119 0.881 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -2.449 -2.327 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.198 4.198 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.479 4.479 8 H 0.117 0.883 9 C 0.145 3.855 10 C -0.418 4.418 11 C 0.184 3.816 12 O -0.300 6.300 13 N -0.422 5.422 14 C 0.201 3.799 15 N -0.316 5.316 16 C -0.025 4.025 17 C -0.227 4.227 18 C -0.217 4.217 19 N -0.321 5.321 20 H 0.094 0.906 21 H 0.140 0.860 22 H 0.270 0.730 23 H 0.244 0.756 24 H 0.137 0.863 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.071 -2.565 -1.735 5.942 hybrid contribution 1.104 0.714 -0.455 1.391 sum -3.967 -1.851 -2.190 4.895 Atomic orbital electron populations 1.70177 1.09083 1.29670 1.27203 1.27088 0.95781 1.04715 0.92225 0.85004 0.79099 0.75097 0.79370 1.18724 1.19110 1.17648 1.20075 0.95520 0.89823 1.42446 0.88343 1.18842 0.87334 0.92923 0.86418 1.22390 1.00571 0.93259 1.25588 1.18850 0.86641 0.84379 0.91752 1.84585 1.76633 1.35091 1.33704 1.66932 1.10603 1.29513 1.35178 1.19443 0.87314 0.84849 0.88275 1.43216 0.99844 1.08703 1.79878 1.21475 0.87410 0.88255 1.05390 1.23486 1.02100 1.04019 0.93113 1.23458 0.97543 1.04446 0.96251 1.68910 1.09244 1.24839 1.29085 0.90555 0.86029 0.73041 0.75559 0.86346 0.88989 0.86724 0.86352 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.37 11.55 21.84 0.25 -38.12 15 2 C 0.03 1.28 5.49 85.31 0.47 1.75 15 3 Si 0.99 36.33 29.56 68.60 2.03 38.36 15 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 5 H -0.27 -9.28 7.11 99.48 0.71 -8.58 15 6 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 7 C -0.44 -23.70 9.19 23.54 0.22 -23.49 15 8 H 0.10 4.85 7.85 -2.91 -0.02 4.83 15 9 C 0.27 15.52 6.57 40.21 0.26 15.78 15 10 C -0.39 -20.12 9.90 23.09 0.23 -19.89 15 11 C 0.36 17.89 7.83 84.79 0.66 18.55 15 12 O -0.49 -19.71 13.57 -88.43 -1.20 -20.91 15 13 N -0.68 -34.51 9.07 -311.10 -2.82 -37.33 15 14 C 0.56 29.10 8.42 261.60 2.20 31.31 15 15 N -0.68 -28.95 5.71 -330.61 -1.89 -30.84 15 16 C 0.08 2.80 6.44 44.99 0.29 3.09 15 17 C -0.19 -4.89 10.46 30.62 0.32 -4.57 15 18 C -0.18 -4.50 10.46 30.62 0.32 -4.18 15 19 N -0.59 -33.49 8.08 -191.64 -1.55 -35.04 15 20 H 0.28 13.11 8.29 -92.71 -0.77 12.34 15 21 H 0.12 5.79 8.06 -2.91 -0.02 5.77 15 22 H 0.41 11.64 9.06 -74.06 -0.67 10.97 15 23 H 0.41 16.77 8.94 -92.71 -0.83 15.95 15 24 H 0.12 4.45 7.28 -2.39 -0.02 4.44 15 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.11 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 28 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -66.39 255.67 -0.50 -66.89 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.29 Total: 38.64 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 4.97 Total: 18.34 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -6.01 Total: -141.33 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.20 Total: -20.91 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -66.39 -0.50 -66.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.109 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds