Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99715 * 2 1 4 4 H 1.48506 * 109.47045 * 269.99840 * 3 2 1 5 5 H 1.48497 * 109.47655 * 30.00004 * 3 2 1 6 6 H 1.48500 * 109.47078 * 150.00132 * 3 2 1 7 7 C 1.37876 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00257 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99648 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.31311 * 59.75824 * 9 7 2 11 11 C 1.52898 * 109.39295 * 300.00016 * 9 7 2 12 12 N 1.47166 * 108.49683 * 189.39344 * 11 9 7 13 13 C 1.46628 * 110.26155 * 71.26591 * 12 11 9 14 14 C 1.50629 * 110.50665 * 307.50856 * 13 12 11 15 15 C 1.38692 * 118.40710 * 197.49258 * 14 13 12 16 16 C 1.38237 * 120.36148 * 180.16909 * 15 14 13 17 17 F 1.35105 * 120.09188 * 180.02562 * 16 15 14 18 18 C 1.38487 * 119.81385 * 0.05513 * 16 15 14 19 19 C 1.37987 * 119.79960 * 359.89298 * 18 16 15 20 20 C 1.37851 * 121.84399 * 17.53991 * 14 13 12 21 21 H 0.96998 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.63290 * 69.69216 * 11 9 7 23 23 H 1.09000 * 109.63371 * 309.09948 * 11 9 7 24 24 H 1.00902 * 110.99338 * 194.68917 * 12 11 9 25 25 H 1.08996 * 109.26924 * 67.77628 * 13 12 11 26 26 H 1.09002 * 109.26748 * 187.25229 * 13 12 11 27 27 H 1.08003 * 119.82161 * 0.17433 * 15 14 13 28 28 H 1.08000 * 120.09950 * 179.88296 * 18 16 15 29 29 H 1.08003 * 119.80672 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8717 -0.6757 0.8898 11 6 4.0197 -0.4731 -1.2479 12 7 5.4735 -0.6787 -1.3466 13 6 5.7662 -2.0678 -1.7136 14 6 5.0642 -3.0192 -0.7803 15 6 5.4991 -4.3352 -0.7299 16 6 4.8818 -5.2435 0.1097 17 9 5.3102 -6.5240 0.1548 18 6 3.8225 -4.8373 0.9039 19 6 3.3909 -3.5276 0.8541 20 6 4.0120 -2.6157 0.0136 21 1 -0.4850 0.8401 -0.0004 22 1 3.8051 0.5926 -1.1684 23 1 3.5309 -0.8831 -2.1317 24 1 5.8856 -0.0359 -2.0063 25 1 5.4278 -2.2493 -2.7337 26 1 6.8416 -2.2360 -1.6566 27 1 6.3247 -4.6522 -1.3499 28 1 3.3356 -5.5434 1.5601 29 1 2.5651 -3.2105 1.4737 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260406216.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = -17.435739 kcal Electronic energy + Delta-G solvation = -14807.606216 eV Core-core repulsion = 12223.755070 eV Total energy + Delta-G solvation = -2583.851147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.48324 -39.43474 -35.91865 -33.54483 -31.48913 -30.35869 -28.62368 -25.29832 -23.55701 -22.53756 -21.26696 -19.11861 -16.93592 -16.79868 -16.46436 -15.26934 -15.19831 -14.92893 -14.20221 -13.96745 -13.68339 -13.24952 -12.72640 -12.66620 -12.40808 -11.98090 -11.92332 -11.10036 -10.91379 -10.49027 -10.36075 -10.09918 -9.64002 -9.21427 -8.69453 -8.52492 -7.98951 -7.77865 -6.18814 -4.20465 1.70677 1.76040 3.17749 3.32026 3.34708 4.12314 4.29913 4.54406 4.81375 5.09699 5.15501 5.27666 5.51498 5.63514 5.68890 5.77686 5.91736 6.06086 6.27014 6.40489 6.53926 6.63901 6.71266 6.87767 7.08057 7.17739 7.37431 7.52842 7.65253 7.80462 8.39351 8.84217 9.41064 10.93390 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037462 B = 0.009852 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.234717 B = 2841.284674 C = 3446.881174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.051 3.949 10 H 0.053 0.947 11 C 0.049 3.951 12 N -0.690 5.690 13 C 0.103 3.897 14 C -0.070 4.070 15 C -0.157 4.157 16 C 0.071 3.929 17 F -0.152 7.152 18 C -0.160 4.160 19 C -0.076 4.076 20 C -0.028 4.028 21 H 0.266 0.734 22 H 0.062 0.938 23 H 0.039 0.961 24 H 0.334 0.666 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 -4.304 -1.861 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.032 3.968 10 H 0.071 0.929 11 C -0.080 4.080 12 N -0.320 5.320 13 C -0.026 4.026 14 C -0.071 4.071 15 C -0.176 4.176 16 C 0.052 3.948 17 F -0.131 7.131 18 C -0.179 4.179 19 C -0.094 4.094 20 C -0.028 4.028 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.151 0.849 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.886 -4.340 -1.179 10.861 hybrid contribution 0.121 0.646 -1.071 1.256 sum 10.007 -3.695 -2.250 10.902 Atomic orbital electron populations 1.69878 1.06237 1.27177 1.49837 1.25002 0.94734 0.98948 0.94197 0.86974 0.80357 0.83665 0.78196 1.20615 1.22078 1.18275 1.21042 0.87644 0.94929 1.51964 0.90063 1.18264 0.96333 0.87947 0.94268 0.92925 1.22663 0.85013 1.00102 1.00174 1.60770 1.13962 1.03621 1.53632 1.20647 0.98946 0.88022 0.95008 1.19418 0.96421 0.92925 0.98332 1.20778 1.02288 0.93179 1.01396 1.17477 0.97709 0.78729 1.00904 1.91428 1.89477 1.36338 1.95834 1.21096 0.97650 0.97783 1.01354 1.21243 0.98852 0.91119 0.98185 1.19994 0.92157 0.97536 0.93122 0.92415 0.91986 0.94228 0.84882 0.94193 0.90173 0.85779 0.85515 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.96 55.43 0.77 -25.40 15 2 C 0.07 2.02 5.45 -17.82 -0.10 1.93 15 3 Si 0.88 20.73 24.28 -169.99 -4.13 16.61 15 4 H -0.28 -6.39 6.96 56.52 0.39 -5.99 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.26 -5.90 6.50 56.52 0.37 -5.54 15 7 C -0.52 -13.73 8.36 -34.44 -0.29 -14.02 15 8 H 0.08 2.32 7.03 -52.49 -0.37 1.95 15 9 C 0.05 1.16 1.99 -92.96 -0.19 0.98 15 10 H 0.05 1.27 7.18 -51.93 -0.37 0.90 15 11 C 0.05 1.02 5.18 -3.73 -0.02 1.00 15 12 N -0.69 -12.03 6.88 -115.16 -0.79 -12.82 15 13 C 0.10 1.63 6.34 -5.16 -0.03 1.60 15 14 C -0.07 -1.29 5.79 -104.63 -0.61 -1.89 15 15 C -0.16 -2.59 9.63 -39.41 -0.38 -2.97 15 16 C 0.07 1.21 7.30 -39.49 -0.29 0.92 15 17 F -0.15 -2.50 17.27 2.25 0.04 -2.46 15 18 C -0.16 -2.77 10.03 -39.58 -0.40 -3.16 15 19 C -0.08 -1.49 8.74 -39.50 -0.35 -1.83 15 20 C -0.03 -0.57 5.44 -104.58 -0.57 -1.14 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.06 1.34 3.61 -51.93 -0.19 1.15 15 23 H 0.04 0.85 8.02 -51.93 -0.42 0.43 15 24 H 0.33 4.82 8.90 -39.29 -0.35 4.47 15 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 26 H 0.08 1.07 8.13 -51.93 -0.42 0.64 15 27 H 0.12 1.71 8.06 -52.48 -0.42 1.28 15 28 H 0.13 1.88 8.06 -52.49 -0.42 1.46 15 29 H 0.14 2.83 7.15 -52.48 -0.38 2.46 15 LS Contribution 239.78 15.07 3.61 3.61 Total: -1.00 -28.65 239.78 -6.64 -35.28 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -2.94 Total: 3.77 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.21 Total: -18.60 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.02 Total: -38.22 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.13 Total: 16.61 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.65 -6.64 -35.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406216.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.848 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds