Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48500 * 109.46990 * 264.78562 * 3 2 1 5 5 H 1.48493 * 109.47354 * 24.78980 * 3 2 1 6 6 H 1.48502 * 109.46921 * 144.79124 * 3 2 1 7 7 C 1.37871 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00010 * 4.74925 * 7 2 1 9 9 C 1.50702 * 120.00147 * 184.75902 * 7 2 1 10 10 H 1.08992 * 109.38823 * 335.28939 * 9 7 2 11 11 C 1.52896 * 109.39079 * 95.09364 * 9 7 2 12 12 N 1.47161 * 108.48993 * 170.45410 * 11 9 7 13 13 C 1.46634 * 110.24255 * 288.69012 * 12 11 9 14 14 C 1.50624 * 110.50160 * 52.49522 * 13 12 11 15 15 C 1.38696 * 118.40548 * 162.66182 * 14 13 12 16 16 C 1.38231 * 120.36386 * 179.82375 * 15 14 13 17 17 F 1.35103 * 120.09791 * 180.02562 * 16 15 14 18 18 C 1.38495 * 119.81305 * 0.02562 * 16 15 14 19 19 C 1.37986 * 119.79899 * 0.06887 * 18 16 15 20 20 C 1.37861 * 121.84645 * 342.61084 * 14 13 12 21 21 H 0.96997 * 120.00132 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.63360 * 290.15033 * 11 9 7 23 23 H 1.08995 * 109.63523 * 50.75325 * 11 9 7 24 24 H 1.00899 * 111.00155 * 165.27696 * 12 11 9 25 25 H 1.09001 * 109.27030 * 172.75662 * 13 12 11 26 26 H 1.08997 * 109.26912 * 292.26147 * 13 12 11 27 27 H 1.07995 * 119.81914 * 359.84609 * 15 14 13 28 28 H 1.08000 * 120.10084 * 180.02562 * 18 16 15 29 29 H 1.07995 * 119.80970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6067 1.9829 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4873 1.4746 0.8072 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0784 9 6 3.5077 -1.1962 0.1077 10 1 3.8980 -0.2456 -0.2554 11 6 3.9110 -1.3851 1.5704 12 7 5.3635 -1.6146 1.6281 13 6 5.6888 -2.9425 1.0980 14 6 5.0822 -3.1283 -0.2680 15 6 5.5691 -4.1472 -1.0732 16 6 5.0394 -4.3563 -2.3327 17 9 5.5175 -5.3508 -3.1123 18 6 4.0171 -3.5434 -2.7933 19 6 3.5343 -2.5285 -1.9927 20 6 4.0659 -2.3187 -0.7289 21 1 -0.4850 0.8400 0.0004 22 1 3.6589 -0.4896 2.1384 23 1 3.3875 -2.2458 1.9864 24 1 5.7095 -1.5064 2.5697 25 1 6.7716 -3.0464 1.0279 26 1 5.2972 -3.7045 1.7718 27 1 6.3663 -4.7811 -0.7139 28 1 3.5995 -3.7028 -3.7765 29 1 2.7374 -1.8943 -2.3519 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260406226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -44.066979 kcal Electronic energy + Delta-G solvation = -14771.642242 eV Core-core repulsion = 12186.636278 eV Total energy + Delta-G solvation = -2585.005964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.81268 -40.82991 -37.26977 -35.31312 -33.25457 -31.77533 -30.03346 -27.07509 -25.06972 -23.85039 -22.77019 -20.51869 -19.12357 -18.12306 -17.78948 -16.77966 -16.54851 -16.23148 -16.04862 -15.28081 -14.95388 -14.81978 -14.41787 -14.12754 -13.97583 -13.49265 -13.23360 -12.84917 -12.42267 -12.30649 -11.90012 -11.80943 -11.38449 -11.23736 -10.75583 -9.89188 -9.33581 -9.21902 -8.29709 -6.35000 0.31247 0.35885 1.37174 1.40029 1.50715 2.34901 2.70706 3.01824 3.26599 3.52323 3.78300 3.99720 4.12099 4.30477 4.47470 4.51038 4.56103 4.59313 4.77603 5.02303 5.11873 5.18596 5.22141 5.32364 5.38831 5.61943 5.85737 5.99859 6.08991 6.33594 6.64207 6.73307 7.31002 8.86272 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.010196 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.831068 B = 2745.612102 C = 3315.621751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.507 4.507 8 H 0.032 0.968 9 C 0.051 3.949 10 H 0.046 0.954 11 C 0.067 3.933 12 N -0.692 5.692 13 C 0.101 3.899 14 C -0.075 4.075 15 C -0.148 4.148 16 C 0.072 3.928 17 F -0.146 7.146 18 C -0.162 4.162 19 C -0.090 4.090 20 C -0.067 4.067 21 H 0.267 0.733 22 H 0.065 0.935 23 H 0.022 0.978 24 H 0.355 0.645 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.742 -5.023 0.495 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.032 3.968 10 H 0.064 0.936 11 C -0.062 4.062 12 N -0.324 5.324 13 C -0.027 4.027 14 C -0.075 4.075 15 C -0.167 4.167 16 C 0.053 3.947 17 F -0.124 7.124 18 C -0.180 4.180 19 C -0.109 4.109 20 C -0.068 4.068 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.175 0.825 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.742 -4.623 -0.107 13.555 hybrid contribution -0.824 0.064 0.344 0.895 sum 11.918 -4.560 0.237 12.763 Atomic orbital electron populations 1.70034 1.08163 1.28171 1.51897 1.25840 0.95314 1.02537 0.93881 0.85914 0.79596 0.79024 0.79560 1.19539 1.21378 1.16550 1.20993 0.90298 0.93000 1.50220 0.94930 1.18140 0.93436 0.93341 0.91921 0.93600 1.22136 0.86615 0.99485 0.97988 1.60678 1.13996 1.29381 1.28323 1.20820 1.01125 0.90033 0.90766 1.19755 0.95654 0.94883 0.97243 1.21085 1.02817 1.00083 0.92695 1.17572 0.97389 0.89080 0.90697 1.91447 1.87470 1.59185 1.74329 1.21229 0.98073 0.96830 1.01891 1.21124 0.98665 0.97157 0.93909 1.20220 0.94327 0.97301 0.94960 0.92389 0.91673 0.95936 0.82530 0.86796 0.92811 0.82208 0.83701 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.94 13.96 21.45 0.30 -56.64 15 2 C 0.02 1.25 5.47 84.65 0.46 1.71 15 3 Si 0.93 42.73 26.98 68.60 1.85 44.58 15 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 15 6 H -0.24 -10.29 6.74 99.48 0.67 -9.61 15 7 C -0.51 -27.67 7.56 25.60 0.19 -27.47 15 8 H 0.03 2.01 8.06 -2.91 -0.02 1.98 15 9 C 0.05 2.31 2.06 -12.31 -0.03 2.28 15 10 H 0.05 2.15 5.28 -2.39 -0.01 2.14 15 11 C 0.07 2.65 5.86 86.22 0.51 3.15 15 12 N -0.69 -21.37 6.88 -518.27 -3.56 -24.93 15 13 C 0.10 2.78 6.34 85.58 0.54 3.32 15 14 C -0.07 -2.54 5.79 -19.87 -0.12 -2.66 15 15 C -0.15 -4.39 9.63 22.38 0.22 -4.18 15 16 C 0.07 2.30 7.30 22.33 0.16 2.46 15 17 F -0.15 -4.40 17.27 44.97 0.78 -3.63 15 18 C -0.16 -5.56 10.03 22.27 0.22 -5.34 15 19 C -0.09 -3.67 9.08 22.32 0.20 -3.47 15 20 C -0.07 -2.79 5.44 -19.84 -0.11 -2.90 15 21 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 22 H 0.06 2.57 8.06 -2.39 -0.02 2.55 15 23 H 0.02 0.92 8.02 -2.39 -0.02 0.90 15 24 H 0.36 8.54 8.90 -89.69 -0.80 7.74 15 25 H 0.11 2.39 8.13 -2.39 -0.02 2.37 15 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 15 27 H 0.16 3.57 8.06 -2.91 -0.02 3.54 15 28 H 0.15 4.29 8.06 -2.91 -0.02 4.27 15 29 H 0.12 5.26 7.37 -2.91 -0.02 5.24 15 Total: -1.00 -62.52 246.99 1.96 -60.56 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.33 Total: 13.15 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 2.26 Total: -33.09 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.26 Total: -81.57 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.85 Total: 44.58 kcal Total: -62.52 1.96 -60.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.495 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds