Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86801 * 120.00323 * 2 1 4 4 H 1.48503 * 109.46697 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47374 * 119.99629 * 3 2 1 6 6 H 1.48503 * 109.47029 * 240.00209 * 3 2 1 7 7 C 1.39894 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99919 * 157.04652 * 7 2 1 9 9 C 1.41019 * 119.99729 * 337.04785 * 7 2 1 10 10 C 1.42197 * 121.03854 * 317.54183 * 9 7 2 11 11 N 1.37807 * 120.67072 * 0.02562 * 10 9 7 12 12 N 1.32641 * 118.65798 * 179.73845 * 10 9 7 13 13 C 1.32405 * 120.90606 * 0.53353 * 12 10 9 14 14 O 1.35321 * 118.83064 * 179.71979 * 13 12 10 15 15 N 1.32632 * 122.34196 * 359.73490 * 13 12 10 16 16 C 1.31964 * 121.24168 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.53302 * 179.97438 * 16 15 13 18 18 C 1.52993 * 117.50140 * 8.76622 * 17 16 15 19 19 C 1.52993 * 117.49740 * 300.10203 * 17 16 15 20 20 H 0.97000 * 120.00464 * 173.06135 * 1 2 3 21 21 H 0.96996 * 120.00154 * 350.51453 * 11 10 9 22 22 H 0.96996 * 120.00012 * 170.50944 * 11 10 9 23 23 H 0.96697 * 114.00171 * 270.01773 * 14 13 12 24 24 H 1.09004 * 115.54639 * 154.43793 * 17 16 15 25 25 H 1.08999 * 117.50305 * 359.97438 * 18 17 16 26 26 H 1.09004 * 117.50142 * 145.02725 * 18 17 16 27 27 H 1.09004 * 117.50227 * 214.98141 * 19 17 16 28 28 H 1.09001 * 117.50272 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 1.2783 2.7464 -0.0006 5 1 3.0970 1.6964 1.2125 6 1 3.0970 1.6963 -1.2126 7 6 2.0087 -1.2115 0.0005 8 1 3.0245 -1.2487 -0.3642 9 6 1.3872 -2.3842 0.4773 10 6 0.5943 -2.3658 1.6575 11 7 0.4137 -1.1971 2.3650 12 7 0.0272 -3.4951 2.0605 13 6 0.2015 -4.6217 1.3871 14 8 -0.3920 -5.7507 1.8391 15 7 0.9374 -4.6832 0.2854 16 6 1.5373 -3.6117 -0.1977 17 6 2.3702 -3.6998 -1.4505 18 6 2.3228 -5.0097 -2.2397 19 6 3.5726 -4.6457 -1.4343 20 1 -0.4851 -0.8339 -0.1015 21 1 0.9352 -0.4100 2.1426 22 1 -0.2349 -1.1615 3.0853 23 1 0.1499 -6.2593 2.4578 24 1 2.4659 -2.7738 -2.0175 25 1 1.6895 -5.8079 -1.8525 26 1 2.3878 -4.9456 -3.3259 27 1 4.4593 -4.3423 -1.9910 28 1 3.7616 -5.2039 -0.5173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413640.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = -1.555785 kcal Electronic energy + Delta-G solvation = -14999.602057 eV Core-core repulsion = 12436.359479 eV Total energy + Delta-G solvation = -2563.242578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48428 -38.56280 -37.97465 -36.15194 -34.82898 -32.46728 -31.22988 -26.99685 -25.21990 -23.81347 -23.11732 -21.67121 -20.06461 -19.48858 -18.93310 -17.31091 -16.58814 -16.12829 -15.98940 -15.84479 -15.47242 -14.97908 -14.48463 -13.80643 -12.93370 -12.75998 -12.60866 -12.55655 -12.48503 -12.25065 -11.93270 -11.37797 -11.37180 -11.10985 -10.81998 -10.10660 -9.75921 -9.32025 -8.74085 -6.39462 0.42153 0.79134 1.59586 1.63720 1.86032 2.36247 2.47210 2.64464 3.00393 3.24555 3.46405 3.69280 4.11047 4.21744 4.36865 4.49853 4.78103 4.82314 4.99897 5.20891 5.30555 5.39792 5.54187 5.71089 5.93856 5.99383 6.53035 6.68707 6.79480 6.88252 7.22614 7.76390 8.04891 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.012621 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.397387 B = 2217.922791 C = 3095.722450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C -0.002 4.002 3 Si 1.113 2.887 4 H -0.277 1.277 5 H -0.256 1.256 6 H -0.262 1.262 7 C -0.524 4.524 8 H 0.084 0.916 9 C -0.061 4.061 10 C 0.366 3.634 11 N -0.820 5.820 12 N -0.593 5.593 13 C 0.377 3.623 14 O -0.471 6.471 15 N -0.539 5.539 16 C 0.090 3.910 17 C -0.098 4.098 18 C -0.158 4.158 19 C -0.150 4.150 20 H 0.269 0.731 21 H 0.412 0.588 22 H 0.395 0.605 23 H 0.403 0.597 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -0.199 -0.321 6.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.217 4.217 3 Si 0.931 3.069 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.102 0.898 9 C -0.072 4.072 10 C 0.116 3.884 11 N -0.369 5.369 12 N -0.330 5.330 13 C 0.074 3.926 14 O -0.273 6.273 15 N -0.267 5.267 16 C -0.052 4.052 17 C -0.117 4.117 18 C -0.195 4.195 19 C -0.188 4.188 20 H 0.079 0.921 21 H 0.246 0.754 22 H 0.224 0.776 23 H 0.260 0.740 24 H 0.131 0.869 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.058 0.608 -0.284 5.102 hybrid contribution 0.269 -1.129 0.400 1.228 sum 5.327 -0.521 0.117 5.354 Atomic orbital electron populations 1.70646 1.08600 1.31934 1.31644 1.28274 0.95443 1.06837 0.91109 0.83019 0.74694 0.69778 0.79449 1.20204 1.18044 1.18689 1.20151 1.01917 0.93032 1.40421 0.89801 1.18864 0.98860 0.96667 0.92808 1.18907 0.94375 0.86140 0.88943 1.41770 1.46212 1.10193 1.38717 1.66780 1.29208 0.99441 1.37530 1.19348 0.96845 0.85304 0.91088 1.84628 1.43990 1.33125 1.65558 1.66982 1.11131 1.34071 1.14488 1.20696 0.99868 0.88381 0.96304 1.20544 1.00529 0.95693 0.94976 1.22914 1.00730 0.97421 0.98459 1.22924 0.92234 1.01729 1.01929 0.92065 0.75361 0.77572 0.74039 0.86853 0.89724 0.86717 0.86206 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.79 12.11 21.82 0.26 -39.53 15 2 C 0.00 -0.10 3.31 85.23 0.28 0.18 15 3 Si 1.11 37.79 29.99 68.60 2.06 39.84 15 4 H -0.28 -9.54 7.11 99.48 0.71 -8.84 15 5 H -0.26 -7.93 7.11 99.48 0.71 -7.23 15 6 H -0.26 -8.39 7.11 99.48 0.71 -7.69 15 7 C -0.52 -25.07 7.55 23.35 0.18 -24.90 15 8 H 0.08 3.89 7.73 -2.91 -0.02 3.87 15 9 C -0.06 -3.12 4.88 -20.97 -0.10 -3.23 15 10 C 0.37 18.32 6.93 134.16 0.93 19.25 15 11 N -0.82 -35.64 7.82 -54.05 -0.42 -36.06 15 12 N -0.59 -30.11 10.47 -309.52 -3.24 -33.35 15 13 C 0.38 18.72 8.69 180.45 1.57 20.28 15 14 O -0.47 -19.98 13.63 -86.09 -1.17 -21.15 15 15 N -0.54 -26.70 9.49 -299.67 -2.84 -29.55 15 16 C 0.09 4.43 6.55 43.19 0.28 4.71 15 17 C -0.10 -4.01 5.50 -11.54 -0.06 -4.07 15 18 C -0.16 -5.38 10.04 30.62 0.31 -5.07 15 19 C -0.15 -4.95 10.24 30.62 0.31 -4.64 15 20 H 0.27 14.71 7.27 -92.71 -0.67 14.03 15 21 H 0.41 17.46 6.07 -92.71 -0.56 16.90 15 22 H 0.40 15.40 8.95 -92.71 -0.83 14.57 15 23 H 0.40 12.48 9.06 -74.06 -0.67 11.81 15 24 H 0.11 4.63 7.41 -2.38 -0.02 4.62 15 25 H 0.08 3.18 7.61 -2.39 -0.02 3.16 15 26 H 0.11 3.19 8.14 -2.38 -0.02 3.17 15 27 H 0.12 3.16 8.14 -2.38 -0.02 3.14 15 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -60.69 247.04 -2.40 -63.09 By element: Atomic # 1 Polarization: 54.92 SS G_CDS: -0.73 Total: 54.18 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 3.69 Total: 2.52 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -6.24 Total: -138.49 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.17 Total: -21.15 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.06 Total: 39.84 kcal Total: -60.69 -2.40 -63.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413640.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds