Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47266 * 269.99960 * 3 2 1 5 5 H 1.48498 * 109.46932 * 30.00594 * 3 2 1 6 6 H 1.48505 * 109.46815 * 150.00076 * 3 2 1 7 7 C 1.37874 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47471 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.33902 * 55.66888 * 10 9 7 12 12 C 1.53748 * 110.29949 * 177.77842 * 10 9 7 13 13 C 1.51237 * 104.53394 * 118.93164 * 12 10 9 14 14 C 1.38193 * 130.94989 * 180.02562 * 13 12 10 15 15 C 1.38183 * 120.18341 * 179.97438 * 14 13 12 16 16 C 1.38541 * 119.80848 * 0.02562 * 15 14 13 17 17 F 1.35092 * 119.91148 * 180.02562 * 16 15 14 18 18 C 1.38045 * 120.17343 * 0.02562 * 16 15 14 19 19 C 1.38615 * 108.53226 * 359.73481 * 13 12 10 20 20 N 1.39579 * 111.65115 * 0.45532 * 19 13 12 21 21 H 0.96997 * 120.00009 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47241 * 60.00350 * 9 7 2 23 23 H 1.08999 * 109.47458 * 300.00290 * 9 7 2 24 24 H 1.08998 * 110.42185 * 237.69675 * 12 10 9 25 25 H 1.08997 * 110.42192 * 0.17386 * 12 10 9 26 26 H 1.07998 * 119.90487 * 359.97438 * 14 13 12 27 27 H 1.08003 * 120.09976 * 179.97438 * 15 14 13 28 28 H 1.07995 * 119.86835 * 180.02562 * 18 16 15 29 29 H 0.97001 * 124.95929 * 179.80935 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9302 -3.5759 0.8417 12 6 1.4967 -5.0039 0.0541 13 6 1.8914 -5.7122 -1.2226 14 6 1.5318 -6.9504 -1.7198 15 6 2.0331 -7.3846 -2.9321 16 6 2.8988 -6.5748 -3.6491 17 9 3.3897 -6.9970 -4.8348 18 6 3.2611 -5.3377 -3.1552 19 6 2.7516 -4.8906 -1.9343 20 7 2.9921 -3.6912 -1.2622 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 1.8142 -5.5806 0.9228 25 1 0.4198 -4.8378 0.0794 26 1 0.8571 -7.5805 -1.1592 27 1 1.7515 -8.3527 -3.3192 28 1 3.9360 -4.7104 -3.7184 29 1 3.5663 -2.9789 -1.5845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440540.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -27.270087 kcal Electronic energy + Delta-G solvation = -14266.662626 eV Core-core repulsion = 11682.385030 eV Total energy + Delta-G solvation = -2584.277596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.63159 -39.90112 -36.04182 -32.99541 -31.63322 -29.86699 -28.55757 -26.59598 -23.35050 -22.12758 -21.02676 -20.15560 -17.54393 -16.52428 -16.35275 -15.41023 -15.31089 -14.78765 -14.75118 -14.12077 -13.44759 -13.19478 -12.70097 -12.36495 -11.80099 -11.74129 -11.64788 -11.36816 -11.09171 -10.72344 -10.65110 -10.46184 -10.05001 -9.32031 -9.20549 -8.48525 -8.37951 -6.87211 -6.11291 -4.15175 1.53625 1.80998 3.24278 3.31565 3.33286 3.86293 4.00121 4.35823 4.72510 4.95857 5.24665 5.25538 5.29828 5.50624 5.69795 5.79223 5.81283 6.18389 6.33042 6.38160 6.48960 6.58734 6.72973 6.83886 7.06480 7.38713 7.55373 7.73462 7.85241 8.24125 8.41699 8.89896 9.49573 10.99618 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045005 B = 0.006478 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.002414 B = 4321.118217 C = 4675.093108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.013 3.987 10 C 0.146 3.854 11 H 0.069 0.931 12 C -0.081 4.081 13 C -0.185 4.185 14 C -0.035 4.035 15 C -0.226 4.226 16 C 0.139 3.861 17 F -0.147 7.147 18 C -0.236 4.236 19 C 0.240 3.760 20 N -0.710 5.710 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -11.376 -2.601 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.025 4.025 10 C 0.042 3.958 11 H 0.087 0.913 12 C -0.118 4.118 13 C -0.191 4.191 14 C -0.054 4.054 15 C -0.248 4.248 16 C 0.119 3.881 17 F -0.126 7.126 18 C -0.260 4.260 19 C 0.130 3.870 20 N -0.336 5.336 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.859 -11.117 -2.456 12.021 hybrid contribution 0.735 1.328 -0.478 1.591 sum 4.594 -9.790 -2.934 11.205 Atomic orbital electron populations 1.69949 1.06069 1.26810 1.50160 1.25000 0.94832 0.99277 0.95099 0.86599 0.79827 0.83484 0.78121 1.20683 1.21145 1.19886 1.21102 0.92786 0.90893 1.51430 0.92797 1.19559 0.93707 0.91111 0.98095 1.21749 0.93754 0.95468 0.84827 0.91347 1.21194 1.01563 0.94718 0.94356 1.20085 1.03747 0.95938 0.99290 1.20069 0.97223 0.93971 0.94095 1.20597 1.04700 1.01574 0.97894 1.17137 0.95901 0.93343 0.81689 1.91444 1.86507 1.90134 1.44496 1.20051 1.09909 0.97654 0.98412 1.18162 0.91294 0.87009 0.90510 1.45189 1.50648 1.15960 1.21794 0.92838 0.95794 0.95254 0.90721 0.89734 0.85750 0.85566 0.85729 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -13.85 8.84 -34.44 -0.30 -14.16 15 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 15 9 C 0.01 0.31 4.47 -27.88 -0.12 0.19 15 10 C 0.15 2.82 3.63 -67.52 -0.25 2.58 15 11 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 12 C -0.08 -1.34 6.59 -27.23 -0.18 -1.52 15 13 C -0.19 -3.06 6.23 -104.24 -0.65 -3.71 15 14 C -0.03 -0.49 10.03 -39.62 -0.40 -0.89 15 15 C -0.23 -3.20 10.04 -39.49 -0.40 -3.60 15 16 C 0.14 2.17 7.28 -39.54 -0.29 1.88 15 17 F -0.15 -2.25 17.26 2.25 0.04 -2.21 15 18 C -0.24 -3.84 10.05 -39.13 -0.39 -4.23 15 19 C 0.24 4.21 7.03 -83.67 -0.59 3.62 15 20 N -0.71 -13.11 5.97 -51.68 -0.31 -13.41 15 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.08 1.41 7.71 -51.93 -0.40 1.01 15 26 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 27 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 28 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 29 H 0.41 7.39 8.89 -40.82 -0.36 7.03 15 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -28.61 256.42 -7.62 -36.23 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.26 Total: 3.09 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -3.66 Total: -18.29 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.43 Total: -38.58 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.61 -7.62 -36.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440540.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.958 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds