Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47266 * 269.99960 * 3 2 1 5 5 H 1.48498 * 109.46932 * 30.00594 * 3 2 1 6 6 H 1.48505 * 109.46815 * 150.00076 * 3 2 1 7 7 C 1.37874 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47471 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.33902 * 55.66888 * 10 9 7 12 12 C 1.53748 * 110.29949 * 177.77842 * 10 9 7 13 13 C 1.51237 * 104.53394 * 118.93164 * 12 10 9 14 14 C 1.38193 * 130.94989 * 180.02562 * 13 12 10 15 15 C 1.38183 * 120.18341 * 179.97438 * 14 13 12 16 16 C 1.38541 * 119.80848 * 0.02562 * 15 14 13 17 17 F 1.35092 * 119.91148 * 180.02562 * 16 15 14 18 18 C 1.38045 * 120.17343 * 0.02562 * 16 15 14 19 19 C 1.38615 * 108.53226 * 359.73481 * 13 12 10 20 20 N 1.39579 * 111.65115 * 0.45532 * 19 13 12 21 21 H 0.96997 * 120.00009 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47241 * 60.00350 * 9 7 2 23 23 H 1.08999 * 109.47458 * 300.00290 * 9 7 2 24 24 H 1.08998 * 110.42185 * 237.69675 * 12 10 9 25 25 H 1.08997 * 110.42192 * 0.17386 * 12 10 9 26 26 H 1.07998 * 119.90487 * 359.97438 * 14 13 12 27 27 H 1.08003 * 120.09976 * 179.97438 * 15 14 13 28 28 H 1.07995 * 119.86835 * 180.02562 * 18 16 15 29 29 H 0.97001 * 124.95929 * 179.80935 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9302 -3.5759 0.8417 12 6 1.4967 -5.0039 0.0541 13 6 1.8914 -5.7122 -1.2226 14 6 1.5318 -6.9504 -1.7198 15 6 2.0331 -7.3846 -2.9321 16 6 2.8988 -6.5748 -3.6491 17 9 3.3897 -6.9970 -4.8348 18 6 3.2611 -5.3377 -3.1552 19 6 2.7516 -4.8906 -1.9343 20 7 2.9921 -3.6912 -1.2622 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 1.8142 -5.5806 0.9228 25 1 0.4198 -4.8378 0.0794 26 1 0.8571 -7.5805 -1.1592 27 1 1.7515 -8.3527 -3.3192 28 1 3.9360 -4.7104 -3.7184 29 1 3.5663 -2.9789 -1.5845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440540.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -43.607738 kcal Electronic energy + Delta-G solvation = -14267.371080 eV Core-core repulsion = 11682.385030 eV Total energy + Delta-G solvation = -2584.986050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83275 -41.20953 -37.41819 -34.96659 -32.95601 -31.50514 -29.85432 -28.23997 -25.12614 -23.43301 -22.27661 -21.73170 -18.90718 -18.36176 -17.75585 -16.72511 -16.62267 -16.48987 -16.04498 -15.62716 -14.80713 -14.43928 -14.25636 -13.95746 -13.56524 -13.34742 -12.99029 -12.86260 -12.66823 -12.40679 -12.24545 -11.92004 -11.81657 -11.15543 -10.78715 -10.59746 -9.59472 -8.24946 -8.18625 -6.31510 0.31521 0.60101 1.39183 1.39641 1.50063 2.38496 2.51114 2.77693 3.13872 3.51835 3.72798 3.91481 4.13218 4.31691 4.36499 4.44894 4.59631 4.79792 4.99075 5.12573 5.17869 5.25346 5.36102 5.40065 5.57604 5.61642 5.77844 5.91983 6.18505 6.31914 6.83789 7.01747 7.37498 8.90266 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045005 B = 0.006478 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.002414 B = 4321.118217 C = 4675.093108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.152 3.848 11 H 0.074 0.926 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.029 4.029 15 C -0.214 4.214 16 C 0.128 3.872 17 F -0.147 7.147 18 C -0.243 4.243 19 C 0.215 3.785 20 N -0.721 5.721 21 H 0.262 0.738 22 H -0.011 1.011 23 H 0.009 0.991 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.129 0.871 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 -12.679 -2.664 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.048 3.952 11 H 0.092 0.908 12 C -0.112 4.112 13 C -0.202 4.202 14 C -0.047 4.047 15 C -0.235 4.235 16 C 0.108 3.892 17 F -0.125 7.125 18 C -0.267 4.267 19 C 0.107 3.893 20 N -0.348 5.348 21 H 0.071 0.929 22 H 0.007 0.993 23 H 0.028 0.972 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.177 0.823 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.598 -12.454 -2.534 13.515 hybrid contribution 0.488 1.639 -0.516 1.786 sum 5.086 -10.815 -3.050 12.335 Atomic orbital electron populations 1.70084 1.07752 1.27656 1.51703 1.25897 0.95638 1.03118 0.94940 0.85515 0.78791 0.78949 0.78170 1.20338 1.21061 1.18625 1.21540 0.93388 0.91923 1.50200 0.91987 1.19414 0.94072 0.92873 0.95362 1.21506 0.92999 0.95072 0.85661 0.90810 1.21123 1.00790 0.93436 0.95843 1.20304 1.03864 0.96852 0.99180 1.20444 0.96904 0.93265 0.94108 1.20990 1.02975 1.02280 0.97254 1.17324 0.96469 0.93420 0.81979 1.91446 1.86575 1.90040 1.44468 1.20185 1.10047 0.98287 0.98180 1.18363 0.92579 0.87030 0.91314 1.45078 1.51129 1.16706 1.21908 0.92882 0.99279 0.97238 0.87843 0.90330 0.82325 0.82575 0.85302 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.13 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 15 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 7 C -0.53 -28.52 8.84 25.60 0.23 -28.30 15 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 15 9 C 0.02 1.03 4.47 29.85 0.13 1.16 15 10 C 0.15 5.89 3.63 45.24 0.16 6.05 15 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 12 C -0.07 -2.37 6.59 30.27 0.20 -2.17 15 13 C -0.20 -6.15 6.23 -19.61 -0.12 -6.27 15 14 C -0.03 -0.72 10.03 22.25 0.22 -0.50 15 15 C -0.21 -5.32 10.04 22.33 0.22 -5.09 15 16 C 0.13 3.72 7.28 22.30 0.16 3.88 15 17 F -0.15 -4.20 17.26 44.97 0.78 -3.42 15 18 C -0.24 -7.69 10.05 22.56 0.23 -7.46 15 19 C 0.21 7.38 7.03 38.34 0.27 7.65 15 20 N -0.72 -26.68 5.97 -317.41 -1.89 -28.57 15 21 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 15 24 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.08 2.58 7.71 -2.39 -0.02 2.56 15 26 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 27 H 0.16 2.94 8.06 -2.91 -0.02 2.92 15 28 H 0.13 3.82 8.06 -2.91 -0.02 3.80 15 29 H 0.41 14.92 8.89 -92.71 -0.82 14.10 15 Total: -1.00 -61.52 256.42 3.70 -57.82 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.34 Total: 14.58 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 2.17 Total: -30.47 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.61 Total: -83.70 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.42 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -61.52 3.70 -57.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440540.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.212 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds