Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.26499 * 304.38546 * 10 9 7 12 12 C 1.53750 * 110.29878 * 182.22209 * 10 9 7 13 13 C 1.51224 * 104.53726 * 241.07039 * 12 10 9 14 14 C 1.38196 * 130.95310 * 179.97438 * 13 12 10 15 15 C 1.38184 * 120.18639 * 180.02562 * 14 13 12 16 16 C 1.38531 * 119.80462 * 359.97438 * 15 14 13 17 17 F 1.35106 * 119.91041 * 180.02562 * 16 15 14 18 18 C 1.38042 * 120.18051 * 359.96306 * 16 15 14 19 19 C 1.38623 * 108.53419 * 359.97438 * 13 12 10 20 20 N 1.39581 * 111.64548 * 0.02562 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09006 * 110.41984 * 359.83234 * 12 10 9 25 25 H 1.08997 * 110.42310 * 122.29879 * 12 10 9 26 26 H 1.08005 * 119.90177 * 0.04255 * 14 13 12 27 27 H 1.07997 * 120.09641 * 179.97438 * 15 14 13 28 28 H 1.07996 * 119.87001 * 180.02562 * 18 16 15 29 29 H 0.96998 * 124.94531 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5737 -0.8444 12 6 1.4968 -5.0039 -0.0564 13 6 1.8924 -5.7127 1.2195 14 6 1.5333 -6.9512 1.7164 15 6 2.0354 -7.3859 2.9281 16 6 2.9016 -6.5765 3.6448 17 9 3.3942 -6.9996 4.8296 18 6 3.2637 -5.3392 3.1512 19 6 2.7584 -4.8942 1.9279 20 7 2.9933 -3.6918 1.2591 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.4198 -4.8378 -0.0810 25 1 1.8136 -5.5802 -0.9257 26 1 0.8584 -7.5811 1.1558 27 1 1.7535 -8.3539 3.3153 28 1 3.9396 -4.7125 3.7139 29 1 3.5678 -2.9798 1.5814 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -27.306121 kcal Electronic energy + Delta-G solvation = -14266.652926 eV Core-core repulsion = 11682.373768 eV Total energy + Delta-G solvation = -2584.279158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.62826 -39.90127 -36.04253 -32.99611 -31.63353 -29.86848 -28.55813 -26.59614 -23.35262 -22.12653 -21.02682 -20.15572 -17.54266 -16.52580 -16.35430 -15.41156 -15.30975 -14.78690 -14.75184 -14.11704 -13.44889 -13.19470 -12.70101 -12.37219 -11.79626 -11.74091 -11.65039 -11.36858 -11.10662 -10.72363 -10.61943 -10.47767 -10.05367 -9.32002 -9.19350 -8.48942 -8.37959 -6.87193 -6.11500 -4.15289 1.53630 1.80929 3.23410 3.31774 3.33989 3.86053 4.00342 4.35731 4.72479 4.95835 5.24683 5.25421 5.29810 5.50579 5.69767 5.79132 5.81280 6.18339 6.33047 6.38105 6.48983 6.58722 6.72922 6.83870 7.06494 7.38728 7.55547 7.73487 7.85203 8.24050 8.41746 8.90017 9.49520 10.99432 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045002 B = 0.006478 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.044621 B = 4321.463317 C = 4675.390337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.013 3.987 10 C 0.146 3.854 11 H 0.068 0.932 12 C -0.081 4.081 13 C -0.185 4.185 14 C -0.035 4.035 15 C -0.226 4.226 16 C 0.139 3.861 17 F -0.147 7.147 18 C -0.236 4.236 19 C 0.240 3.760 20 N -0.710 5.710 21 H 0.261 0.739 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -11.392 2.595 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.025 4.025 10 C 0.042 3.958 11 H 0.086 0.914 12 C -0.118 4.118 13 C -0.190 4.190 14 C -0.054 4.054 15 C -0.248 4.248 16 C 0.119 3.881 17 F -0.126 7.126 18 C -0.260 4.260 19 C 0.130 3.870 20 N -0.336 5.336 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.879 -11.134 2.456 12.043 hybrid contribution 0.731 1.327 0.463 1.585 sum 4.610 -9.806 2.919 11.222 Atomic orbital electron populations 1.69960 1.06065 1.26698 1.50260 1.25005 0.94832 0.99290 0.95111 0.86545 0.80017 0.83809 0.77663 1.19791 1.20940 1.21014 1.21141 0.92826 0.90879 1.51292 0.92738 1.19564 0.93714 0.91125 0.98103 1.21745 0.93735 0.95473 0.84839 0.91367 1.21190 1.01569 0.94709 0.94356 1.20084 1.03578 0.95999 0.99381 1.20071 0.97250 0.93940 0.94107 1.20593 1.04689 1.01579 0.97894 1.17137 0.95903 0.93319 0.81717 1.91448 1.86440 1.90098 1.44601 1.20048 1.09995 0.97703 0.98269 1.18164 0.91316 0.87011 0.90508 1.45184 1.50676 1.15679 1.22055 0.92894 0.95251 0.95777 0.89726 0.90726 0.85750 0.85565 0.85727 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.52 -13.83 8.85 -34.44 -0.30 -14.14 15 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 15 9 C 0.01 0.30 4.47 -27.88 -0.12 0.18 15 10 C 0.15 2.82 3.63 -67.53 -0.25 2.58 15 11 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 12 C -0.08 -1.33 6.58 -27.24 -0.18 -1.51 15 13 C -0.19 -3.06 6.23 -104.24 -0.65 -3.71 15 14 C -0.03 -0.49 10.03 -39.62 -0.40 -0.89 15 15 C -0.23 -3.20 10.04 -39.49 -0.40 -3.59 15 16 C 0.14 2.16 7.28 -39.55 -0.29 1.88 15 17 F -0.15 -2.25 17.26 2.25 0.04 -2.21 15 18 C -0.24 -3.84 10.05 -39.13 -0.39 -4.23 15 19 C 0.24 4.20 7.03 -83.67 -0.59 3.61 15 20 N -0.71 -13.11 5.97 -51.68 -0.31 -13.42 15 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.08 1.41 7.71 -51.93 -0.40 1.01 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.12 1.42 8.06 -52.48 -0.42 0.99 15 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 29 H 0.41 7.40 8.89 -40.82 -0.36 7.04 15 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -28.62 256.42 -7.62 -36.24 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.26 Total: 3.06 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.66 Total: -18.29 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.43 Total: -38.58 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.62 -7.62 -36.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.934 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds