Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.26499 * 304.38546 * 10 9 7 12 12 C 1.53750 * 110.29878 * 182.22209 * 10 9 7 13 13 C 1.51224 * 104.53726 * 241.07039 * 12 10 9 14 14 C 1.38196 * 130.95310 * 179.97438 * 13 12 10 15 15 C 1.38184 * 120.18639 * 180.02562 * 14 13 12 16 16 C 1.38531 * 119.80462 * 359.97438 * 15 14 13 17 17 F 1.35106 * 119.91041 * 180.02562 * 16 15 14 18 18 C 1.38042 * 120.18051 * 359.96306 * 16 15 14 19 19 C 1.38623 * 108.53419 * 359.97438 * 13 12 10 20 20 N 1.39581 * 111.64548 * 0.02562 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09006 * 110.41984 * 359.83234 * 12 10 9 25 25 H 1.08997 * 110.42310 * 122.29879 * 12 10 9 26 26 H 1.08005 * 119.90177 * 0.04255 * 14 13 12 27 27 H 1.07997 * 120.09641 * 179.97438 * 15 14 13 28 28 H 1.07996 * 119.87001 * 180.02562 * 18 16 15 29 29 H 0.96998 * 124.94531 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5737 -0.8444 12 6 1.4968 -5.0039 -0.0564 13 6 1.8924 -5.7127 1.2195 14 6 1.5333 -6.9512 1.7164 15 6 2.0354 -7.3859 2.9281 16 6 2.9016 -6.5765 3.6448 17 9 3.3942 -6.9996 4.8296 18 6 3.2637 -5.3392 3.1512 19 6 2.7584 -4.8942 1.9279 20 7 2.9933 -3.6918 1.2591 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.4198 -4.8378 -0.0810 25 1 1.8136 -5.5802 -0.9257 26 1 0.8584 -7.5811 1.1558 27 1 1.7535 -8.3539 3.3153 28 1 3.9396 -4.7125 3.7139 29 1 3.5678 -2.9798 1.5814 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -43.653519 kcal Electronic energy + Delta-G solvation = -14267.361803 eV Core-core repulsion = 11682.373768 eV Total energy + Delta-G solvation = -2584.988035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.82908 -41.20940 -37.41868 -34.96703 -32.95612 -31.50645 -29.85469 -28.23998 -25.12810 -23.43156 -22.27626 -21.73174 -18.90654 -18.36473 -17.75586 -16.72520 -16.62280 -16.48761 -16.04491 -15.62435 -14.80890 -14.43851 -14.26465 -13.95715 -13.55937 -13.34762 -12.99197 -12.88169 -12.67015 -12.37045 -12.26308 -11.91958 -11.81883 -11.14128 -10.78770 -10.60433 -9.59443 -8.25040 -8.18686 -6.31591 0.31565 0.60063 1.38054 1.39668 1.50913 2.38344 2.51002 2.77834 3.13764 3.51823 3.72802 3.91542 4.13223 4.31713 4.36365 4.44949 4.59669 4.79911 4.99043 5.12569 5.17908 5.25376 5.36156 5.40147 5.57668 5.61680 5.77898 5.92016 6.18497 6.31997 6.83920 7.01716 7.37457 8.90256 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045002 B = 0.006478 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.044621 B = 4321.463317 C = 4675.390337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.029 4.029 15 C -0.214 4.214 16 C 0.128 3.872 17 F -0.147 7.147 18 C -0.243 4.243 19 C 0.215 3.785 20 N -0.721 5.721 21 H 0.262 0.738 22 H 0.009 0.991 23 H -0.011 1.011 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.129 0.871 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -12.700 2.657 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.048 3.952 11 H 0.092 0.908 12 C -0.112 4.112 13 C -0.202 4.202 14 C -0.047 4.047 15 C -0.235 4.235 16 C 0.108 3.892 17 F -0.125 7.125 18 C -0.267 4.267 19 C 0.107 3.893 20 N -0.348 5.348 21 H 0.071 0.929 22 H 0.028 0.972 23 H 0.007 0.993 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.177 0.823 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.612 -12.475 2.532 13.540 hybrid contribution 0.485 1.641 0.501 1.783 sum 5.097 -10.834 3.033 12.352 Atomic orbital electron populations 1.70091 1.07746 1.27587 1.51785 1.25899 0.95639 1.03120 0.94959 0.85464 0.79187 0.79270 0.77485 1.18509 1.20565 1.21027 1.21570 0.93393 0.91912 1.50069 0.91984 1.19419 0.94078 0.92880 0.95374 1.21503 0.92979 0.95081 0.85668 0.90834 1.21119 1.00796 0.93425 0.95844 1.20303 1.03689 0.96918 0.99278 1.20446 0.96934 0.93233 0.94116 1.20986 1.02965 1.02284 0.97253 1.17324 0.96470 0.93395 0.82008 1.91451 1.86509 1.90005 1.44573 1.20183 1.10137 0.98337 0.98037 1.18362 0.92597 0.87024 0.91306 1.45072 1.51157 1.16432 1.22171 0.92890 0.97231 0.99256 0.90319 0.87845 0.82324 0.82575 0.85300 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.11 15 2 C 0.00 0.10 5.46 84.65 0.46 0.56 15 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 7 C -0.53 -28.46 8.85 25.60 0.23 -28.23 15 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 15 9 C 0.02 1.01 4.47 29.85 0.13 1.15 15 10 C 0.15 5.89 3.63 45.24 0.16 6.05 15 11 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 12 C -0.07 -2.37 6.58 30.27 0.20 -2.17 15 13 C -0.20 -6.14 6.23 -19.62 -0.12 -6.26 15 14 C -0.03 -0.72 10.03 22.25 0.22 -0.50 15 15 C -0.21 -5.31 10.04 22.33 0.22 -5.09 15 16 C 0.13 3.71 7.28 22.29 0.16 3.88 15 17 F -0.15 -4.20 17.26 44.97 0.78 -3.42 15 18 C -0.24 -7.68 10.05 22.56 0.23 -7.45 15 19 C 0.21 7.37 7.03 38.34 0.27 7.64 15 20 N -0.72 -26.69 5.97 -317.42 -1.89 -28.59 15 21 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 22 H 0.01 0.50 8.14 -2.39 -0.02 0.48 15 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 15 24 H 0.08 2.58 7.71 -2.38 -0.02 2.56 15 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 27 H 0.16 2.94 8.06 -2.91 -0.02 2.92 15 28 H 0.13 3.82 8.06 -2.91 -0.02 3.80 15 29 H 0.41 14.94 8.89 -92.71 -0.82 14.12 15 Total: -1.00 -61.53 256.42 3.70 -57.83 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.34 Total: 14.49 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 2.17 Total: -30.43 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.61 Total: -83.69 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.42 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -61.53 3.70 -57.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.180 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds