Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99584 * 2 1 4 4 H 1.48502 * 109.47151 * 240.00390 * 3 2 1 5 5 H 1.48497 * 109.47523 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47032 * 120.00608 * 3 2 1 7 7 C 1.37869 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00183 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.38668 * 59.80410 * 9 7 2 11 11 C 1.52894 * 109.38968 * 300.00440 * 9 7 2 12 12 N 1.47158 * 108.50559 * 189.51202 * 11 9 7 13 13 C 1.46629 * 110.26263 * 71.24280 * 12 11 9 14 14 C 1.50631 * 110.50032 * 307.46706 * 13 12 11 15 15 C 1.38755 * 118.39791 * 197.49699 * 14 13 12 16 16 C 1.37975 * 120.41554 * 180.27674 * 15 14 13 17 17 C 1.38487 * 119.84159 * 0.02844 * 16 15 14 18 18 F 1.35100 * 120.11561 * 179.97438 * 17 16 15 19 19 C 1.38263 * 119.77159 * 359.90359 * 17 16 15 20 20 C 1.37846 * 121.83757 * 17.87409 * 14 13 12 21 21 H 0.97004 * 120.00417 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.63090 * 69.81450 * 11 9 7 23 23 H 1.08997 * 109.63175 * 309.22058 * 11 9 7 24 24 H 1.00900 * 111.00308 * 307.81530 * 12 11 9 25 25 H 1.09005 * 109.27271 * 187.20450 * 13 12 11 26 26 H 1.08999 * 109.24008 * 67.70949 * 13 12 11 27 27 H 1.08001 * 119.79263 * 0.25382 * 15 14 13 28 28 H 1.07997 * 120.08174 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.83119 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6220 -2.5537 -0.8890 11 6 0.3732 -2.5784 1.2487 12 7 -0.1733 -3.9410 1.3498 13 6 0.8852 -4.8867 1.7175 14 6 2.0589 -4.7546 0.7826 15 6 2.9829 -5.7885 0.7331 16 6 4.0766 -5.7085 -0.1042 17 6 4.2545 -4.5893 -0.9003 18 9 5.3237 -4.5049 -1.7218 19 6 3.3334 -3.5593 -0.8525 20 6 2.2363 -3.6398 -0.0087 21 1 -0.4851 0.8400 0.0004 22 1 -0.4437 -1.8614 1.1683 23 1 0.9725 -2.3577 2.1320 24 1 -0.6206 -4.2161 0.4882 25 1 0.4946 -5.9029 1.6631 26 1 1.2124 -4.6812 2.7367 27 1 2.8453 -6.6613 1.3542 28 1 4.7922 -6.5166 -0.1387 29 1 3.4714 -2.6859 -1.4726 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479655.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -45.534522 kcal Electronic energy + Delta-G solvation = -14819.694507 eV Core-core repulsion = 12234.624906 eV Total energy + Delta-G solvation = -2585.069601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.85743 -40.89905 -37.27773 -35.28479 -33.04811 -31.18600 -29.96366 -27.02269 -24.68162 -24.10916 -22.92476 -20.97618 -18.49371 -18.20599 -17.37209 -16.85575 -16.56475 -16.54419 -15.95152 -15.12330 -14.89938 -14.56327 -14.32071 -14.09921 -13.59033 -13.03512 -12.87143 -12.73937 -12.65387 -12.39400 -12.22069 -12.00126 -11.47808 -11.26509 -10.59020 -9.72633 -9.35735 -9.21615 -8.17580 -6.28867 0.24439 0.41026 1.39442 1.39964 1.47847 2.38004 2.69958 3.10999 3.34578 3.63264 3.90151 4.01024 4.09590 4.36846 4.44652 4.54303 4.77189 4.89334 4.93269 5.10510 5.17438 5.26330 5.38305 5.43505 5.62157 5.66742 5.92796 6.03432 6.14979 6.34358 6.58387 6.79354 7.37818 8.87815 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.011213 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.904217 B = 2496.582653 C = 3423.640548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.047 3.953 10 H 0.013 0.987 11 C 0.081 3.919 12 N -0.687 5.687 13 C 0.100 3.900 14 C -0.146 4.146 15 C -0.079 4.079 16 C -0.162 4.162 17 C 0.071 3.929 18 F -0.152 7.152 19 C -0.164 4.164 20 C -0.040 4.040 21 H 0.265 0.735 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.338 0.662 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -10.889 2.066 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.028 3.972 10 H 0.031 0.969 11 C -0.049 4.049 12 N -0.313 5.313 13 C -0.030 4.030 14 C -0.147 4.147 15 C -0.097 4.097 16 C -0.180 4.180 17 C 0.052 3.948 18 F -0.131 7.131 19 C -0.183 4.183 20 C -0.040 4.040 21 H 0.074 0.926 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.154 0.846 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.189 0.811 28 H 0.179 0.821 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.602 -10.673 2.710 11.586 hybrid contribution 1.189 1.495 -1.402 2.369 sum 4.790 -9.178 1.308 10.435 Atomic orbital electron populations 1.69964 1.06854 1.27639 1.50413 1.25649 0.95708 1.02077 0.94430 0.85703 0.78512 0.79371 0.78669 1.20068 1.20455 1.19818 1.21310 0.92687 0.91088 1.51855 0.93193 1.18290 0.92580 0.90850 0.95502 0.96895 1.21880 0.98020 0.88970 0.95981 1.61143 1.28649 1.02889 1.38630 1.21069 0.87220 0.97901 0.96800 1.20952 1.00276 0.94004 0.99515 1.21277 0.92018 0.98779 0.97609 1.21287 1.01082 0.97470 0.98170 1.17904 0.85732 0.97176 0.93942 1.91426 1.53992 1.96719 1.70943 1.21174 0.95922 0.98689 1.02467 1.20070 0.95032 0.95204 0.93705 0.92598 0.90491 0.94204 0.84591 0.86902 0.89778 0.81144 0.82101 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 11.44 21.44 0.25 -50.70 15 2 C 0.02 1.16 5.30 84.65 0.45 1.61 15 3 Si 0.95 43.36 29.54 68.60 2.03 45.38 15 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 7 C -0.53 -28.92 7.77 25.60 0.20 -28.72 15 8 H 0.05 2.75 6.78 -2.91 -0.02 2.73 15 9 C 0.05 2.34 2.28 -12.31 -0.03 2.31 15 10 H 0.01 0.73 8.14 -2.39 -0.02 0.71 15 11 C 0.08 3.76 5.51 86.22 0.48 4.23 15 12 N -0.69 -25.35 6.96 -518.28 -3.61 -28.95 15 13 C 0.10 3.00 6.34 85.59 0.54 3.54 15 14 C -0.15 -4.93 5.79 -19.86 -0.12 -5.04 15 15 C -0.08 -2.09 9.64 22.33 0.22 -1.87 15 16 C -0.16 -4.54 10.03 22.27 0.22 -4.32 15 17 C 0.07 2.56 7.30 22.34 0.16 2.72 15 18 F -0.15 -5.39 17.27 44.97 0.78 -4.62 15 19 C -0.16 -6.90 8.72 22.37 0.20 -6.70 15 20 C -0.04 -1.69 5.43 -19.85 -0.11 -1.80 15 21 H 0.26 14.16 8.31 -92.71 -0.77 13.39 15 22 H 0.08 4.02 6.40 -2.39 -0.02 4.01 15 23 H 0.04 1.92 8.02 -2.39 -0.02 1.90 15 24 H 0.34 12.03 8.74 -89.69 -0.78 11.24 15 25 H 0.11 2.53 8.13 -2.38 -0.02 2.51 15 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.17 2.95 8.06 -2.91 -0.02 2.92 15 28 H 0.16 3.35 8.06 -2.91 -0.02 3.33 15 29 H 0.11 5.17 7.14 -2.91 -0.02 5.15 15 Total: -1.00 -59.48 246.58 2.04 -57.44 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.39 Total: 15.48 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 2.21 Total: -34.04 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -3.36 Total: -79.65 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -59.48 2.04 -57.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479655.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.906 kcal (2) G-P(sol) polarization free energy of solvation -59.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds