Wall clock time and date at job start Mon Mar 30 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30942 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47174 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47147 * 120.00153 * 3 2 1 6 6 H 1.48498 * 109.47579 * 240.00099 * 3 2 1 7 7 C 1.39871 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00053 * 206.63803 * 7 2 1 9 9 C 1.41059 * 119.99890 * 26.64097 * 7 2 1 10 10 C 1.40997 * 121.00807 * 24.27403 * 9 7 2 11 11 N 1.31868 * 118.92678 * 179.97438 * 10 9 7 12 12 C 1.32833 * 121.17335 * 0.02562 * 11 10 9 13 13 N 1.37950 * 118.86911 * 179.97438 * 12 11 10 14 14 C 1.46502 * 120.00242 * 359.97438 * 13 12 11 15 15 C 1.52999 * 117.50139 * 223.62352 * 14 13 12 16 16 C 1.52997 * 117.49586 * 155.00057 * 14 13 12 17 17 N 1.32653 * 122.25834 * 359.97438 * 12 11 10 18 18 C 1.32385 * 120.92044 * 359.72591 * 17 12 11 19 19 O 1.35283 * 120.63057 * 180.26037 * 18 17 12 20 20 H 0.96993 * 119.99461 * 185.89140 * 1 2 3 21 21 H 1.07998 * 120.53574 * 0.02562 * 10 9 7 22 22 H 0.96999 * 119.99930 * 180.02562 * 13 12 11 23 23 H 1.08992 * 115.54765 * 9.33394 * 14 13 12 24 24 H 1.09006 * 117.49466 * 0.02562 * 15 14 13 25 25 H 1.09000 * 117.50248 * 145.01891 * 15 14 13 26 26 H 1.09001 * 117.49676 * 214.97926 * 16 14 13 27 27 H 1.09001 * 117.50533 * 0.02562 * 16 14 13 28 28 H 0.96701 * 114.00676 * 270.26027 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 1.2784 2.7464 0.0006 5 1 3.0972 1.6963 1.2125 6 1 3.0972 1.6965 -1.2125 7 6 2.0088 -1.2113 -0.0005 8 1 3.0028 -1.2612 0.4188 9 6 1.4158 -2.3678 -0.5488 10 6 0.3999 -2.2716 -1.5219 11 7 -0.1255 -3.3794 -2.0071 12 6 0.2854 -4.5734 -1.5947 13 7 -0.2977 -5.7013 -2.1340 14 6 -1.3515 -5.5700 -3.1432 15 6 -2.5780 -6.4743 -3.0057 16 6 -1.5529 -6.7382 -4.1104 17 7 1.2371 -4.7183 -0.6821 18 6 1.8278 -3.6639 -0.1419 19 8 2.8014 -3.8186 0.7845 20 1 -0.4849 -0.8356 0.0862 21 1 0.0584 -1.3062 -1.8649 22 1 -0.0105 -6.5814 -1.8444 23 1 -1.5089 -4.5633 -3.5302 24 1 -2.6010 -7.1666 -2.1641 25 1 -3.5427 -6.0625 -3.3022 26 1 -1.8432 -6.5001 -5.1337 27 1 -0.9016 -7.6047 -3.9957 28 1 2.4764 -3.8554 1.6945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260481032.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:06 Heat of formation + Delta-G solvation = 7.352320 kcal Electronic energy + Delta-G solvation = -14451.310671 eV Core-core repulsion = 11888.454377 eV Total energy + Delta-G solvation = -2562.856294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.40095 -38.88133 -37.85059 -36.51020 -33.94382 -33.32360 -30.90995 -26.92914 -24.85053 -23.83760 -23.20224 -22.19415 -20.05956 -19.69382 -18.80464 -17.66768 -16.41613 -16.28407 -16.12712 -15.47895 -15.18857 -14.91431 -14.49699 -14.10949 -13.54560 -12.97435 -12.84251 -12.55007 -12.35581 -12.27429 -11.91553 -11.37636 -11.35249 -11.22452 -10.92124 -10.41480 -9.91057 -9.32347 -8.92264 -6.38275 0.39329 0.64527 1.55961 1.66182 1.85852 2.11637 2.32692 2.61244 3.02263 3.11346 3.47408 3.72784 3.98938 4.18651 4.19555 4.27396 4.64803 4.77445 4.85882 5.02260 5.09633 5.25184 5.35424 5.62328 5.82825 6.03243 6.31298 6.54925 6.69091 6.81735 6.95146 7.77091 7.91509 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.007509 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.551617 B = 3728.043104 C = 4227.501675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.008 3.992 3 Si 1.120 2.880 4 H -0.270 1.270 5 H -0.256 1.256 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.083 0.917 9 C -0.060 4.060 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.443 3.557 13 N -0.684 5.684 14 C 0.084 3.916 15 C -0.192 4.192 16 C -0.177 4.177 17 N -0.566 5.566 18 C 0.234 3.766 19 O -0.476 6.476 20 H 0.281 0.719 21 H 0.147 0.853 22 H 0.407 0.593 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -4.519 -2.738 5.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.209 4.209 3 Si 0.936 3.064 4 H -0.194 1.194 5 H -0.180 1.180 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.101 0.899 9 C -0.069 4.069 10 C -0.113 4.113 11 N -0.258 5.258 12 C 0.089 3.911 13 N -0.324 5.324 14 C -0.023 4.023 15 C -0.231 4.231 16 C -0.215 4.215 17 N -0.296 5.296 18 C 0.044 3.956 19 O -0.282 6.282 20 H 0.093 0.907 21 H 0.164 0.836 22 H 0.244 0.756 23 H 0.133 0.867 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.119 0.881 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.542 -3.610 -3.694 5.757 hybrid contribution 0.371 -1.536 1.151 1.955 sum -2.171 -5.146 -2.543 6.137 Atomic orbital electron populations 1.70679 1.08827 1.32952 1.30160 1.28542 0.95486 1.07381 0.89479 0.82952 0.74726 0.69460 0.79243 1.19413 1.18032 1.18936 1.20413 1.03811 0.94031 1.35839 0.89865 1.19402 0.96423 0.94328 0.96787 1.22812 0.98436 0.95135 0.94883 1.67281 1.30970 0.98076 1.29516 1.18537 0.91888 0.86763 0.93940 1.42704 1.41329 1.03460 1.44953 1.21403 0.90339 0.97134 0.93439 1.23500 0.94932 1.03496 1.01187 1.23458 1.02245 0.99465 0.96356 1.66627 1.11417 1.37012 1.14591 1.19113 0.93795 0.87190 0.95500 1.84551 1.30268 1.94972 1.18455 0.90682 0.83553 0.75613 0.86679 0.88651 0.87149 0.86581 0.88056 0.74737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.67 12.33 21.82 0.27 -40.40 15 2 C 0.01 0.39 4.95 85.22 0.42 0.82 15 3 Si 1.12 40.24 30.01 68.60 2.06 42.30 15 4 H -0.27 -9.51 7.11 99.48 0.71 -8.80 15 5 H -0.26 -8.44 7.11 99.48 0.71 -7.73 15 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 7 C -0.51 -26.22 8.71 23.36 0.20 -26.02 15 8 H 0.08 4.21 7.78 -2.91 -0.02 4.19 15 9 C -0.06 -3.19 5.34 -20.99 -0.11 -3.30 15 10 C 0.06 2.98 9.26 85.36 0.79 3.77 15 11 N -0.54 -26.87 9.01 -196.33 -1.77 -28.64 15 12 C 0.44 21.19 8.41 261.49 2.20 23.39 15 13 N -0.68 -26.04 5.70 -330.47 -1.88 -27.92 15 14 C 0.08 2.67 6.44 44.99 0.29 2.96 15 15 C -0.19 -4.61 10.46 30.59 0.32 -4.29 15 16 C -0.18 -4.01 10.45 30.59 0.32 -3.69 15 17 N -0.57 -28.32 10.45 -309.48 -3.23 -31.56 15 18 C 0.23 12.01 7.87 85.53 0.67 12.68 15 19 O -0.48 -21.64 12.97 -85.68 -1.11 -22.76 15 20 H 0.28 14.96 6.75 -92.71 -0.63 14.33 15 21 H 0.15 7.67 6.57 -2.91 -0.02 7.65 15 22 H 0.41 13.93 8.93 -92.71 -0.83 13.10 15 23 H 0.12 4.13 7.26 -2.39 -0.02 4.12 15 24 H 0.10 2.22 8.14 -2.38 -0.02 2.20 15 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 28 H 0.40 14.13 9.06 -74.06 -0.67 13.46 15 Total: -1.00 -61.26 252.59 -0.70 -61.97 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.14 Total: 40.69 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.11 Total: 6.32 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -6.62 Total: -128.52 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.11 Total: -22.76 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.06 Total: 42.30 kcal Total: -61.26 -0.70 -61.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481032.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds