Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48493 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47055 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47214 * 59.99900 * 3 2 1 7 7 C 1.37868 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00195 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.38567 * 59.80178 * 9 7 2 11 11 C 1.52892 * 109.38691 * 299.99869 * 9 7 2 12 12 N 1.47159 * 108.50296 * 189.55793 * 11 9 7 13 13 C 1.46633 * 110.24414 * 71.25776 * 12 11 9 14 14 C 1.50618 * 110.49496 * 307.47796 * 13 12 11 15 15 C 1.38955 * 118.42235 * 197.37043 * 14 13 12 16 16 F 1.35099 * 119.84007 * 0.20577 * 15 14 13 17 17 C 1.38243 * 120.32227 * 180.23130 * 15 14 13 18 18 C 1.38228 * 119.83566 * 0.03669 * 17 15 14 19 19 C 1.38036 * 119.85700 * 0.19352 * 18 17 15 20 20 C 1.37796 * 121.86195 * 17.54410 * 14 13 12 21 21 H 0.96999 * 120.00089 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.63032 * 69.85767 * 11 9 7 23 23 H 1.08996 * 109.79963 * 309.36014 * 11 9 7 24 24 H 1.00903 * 111.00062 * 307.84134 * 12 11 9 25 25 H 1.09006 * 109.27176 * 187.21711 * 13 12 11 26 26 H 1.09004 * 109.27207 * 67.74863 * 13 12 11 27 27 H 1.07999 * 120.08120 * 180.02562 * 17 15 14 28 28 H 1.08002 * 120.06639 * 179.90763 * 18 17 15 29 29 H 1.08008 * 119.79638 * 179.68009 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6219 -2.5545 -0.8867 11 6 0.3733 -2.5773 1.2511 12 7 -0.1724 -3.9401 1.3540 13 6 0.8870 -4.8843 1.7233 14 6 2.0606 -4.7521 0.7885 15 6 2.9888 -5.7851 0.7420 16 9 2.8210 -6.8752 1.5222 17 6 4.0833 -5.7026 -0.0984 18 6 4.2556 -4.5867 -0.8957 19 6 3.3363 -3.5582 -0.8463 20 6 2.2338 -3.6418 -0.0090 21 1 -0.4850 0.8400 0.0004 22 1 -0.4441 -1.8608 1.1698 23 1 0.9695 -2.3538 2.1358 24 1 -0.6192 -4.2167 0.4926 25 1 0.4974 -5.9010 1.6700 26 1 1.2137 -4.6778 2.7425 27 1 4.8021 -6.5080 -0.1317 28 1 5.1102 -4.5177 -1.5525 29 1 3.4747 -2.6845 -1.4660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -44.146163 kcal Electronic energy + Delta-G solvation = -14907.377142 eV Core-core repulsion = 12322.367744 eV Total energy + Delta-G solvation = -2585.009397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.85286 -40.83242 -37.45017 -35.25286 -32.70204 -31.65804 -29.75481 -27.10558 -24.83800 -24.12761 -22.71207 -21.05004 -18.57866 -18.13137 -17.25439 -16.93902 -16.63060 -16.51741 -16.05661 -15.20656 -14.85742 -14.56056 -14.43870 -14.07067 -13.44831 -12.92882 -12.86219 -12.78037 -12.58202 -12.41871 -12.31098 -12.01511 -11.47416 -11.32332 -10.58693 -9.57700 -9.46144 -9.29290 -8.15297 -6.26566 0.27532 0.38146 1.40922 1.44219 1.54272 2.40658 2.72504 3.13954 3.33114 3.51786 3.85604 3.93527 4.18963 4.31114 4.44794 4.46734 4.67972 4.79107 4.90641 5.06422 5.21010 5.23891 5.40334 5.50473 5.59713 5.67511 5.92648 6.01457 6.11988 6.32510 6.50143 6.81249 7.40515 8.91042 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035980 B = 0.009789 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.033778 B = 2859.678038 C = 3455.758170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.048 3.952 10 H 0.017 0.983 11 C 0.077 3.923 12 N -0.683 5.683 13 C 0.103 3.897 14 C -0.176 4.176 15 C 0.084 3.916 16 F -0.143 7.143 17 C -0.164 4.164 18 C -0.091 4.091 19 C -0.132 4.132 20 C -0.041 4.041 21 H 0.264 0.736 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.338 0.662 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 -8.782 -0.571 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.029 3.971 10 H 0.035 0.965 11 C -0.052 4.052 12 N -0.310 5.310 13 C -0.028 4.028 14 C -0.179 4.179 15 C 0.064 3.936 16 F -0.122 7.122 17 C -0.183 4.183 18 C -0.109 4.109 19 C -0.150 4.150 20 C -0.041 4.041 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.155 0.845 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.178 0.822 28 H 0.179 0.821 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.635 -8.621 0.140 10.300 hybrid contribution 0.624 0.932 -0.698 1.321 sum 6.259 -7.689 -0.558 9.930 Atomic orbital electron populations 1.69991 1.07076 1.27494 1.50723 1.25702 0.95674 1.02294 0.94468 0.85522 0.79055 0.79621 0.77589 1.19170 1.20547 1.20792 1.21375 0.93023 0.90540 1.51396 0.92283 1.18281 0.92636 0.91033 0.95176 0.96535 1.21947 0.98368 0.88403 0.96449 1.61160 1.28128 1.03009 1.38677 1.20833 0.87801 0.97415 0.96702 1.20704 1.00138 0.94701 1.02342 1.17742 0.97297 0.84188 0.94360 1.91429 1.95535 1.52068 1.73159 1.21281 0.97811 1.01110 0.98055 1.21273 0.99258 0.91906 0.98414 1.21426 0.94478 0.99542 0.99597 1.20118 0.96559 0.93687 0.93774 0.92709 0.90226 0.94399 0.84500 0.88695 0.90489 0.82217 0.82097 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.65 11.44 21.44 0.25 -50.41 15 2 C 0.02 0.97 5.30 84.65 0.45 1.42 15 3 Si 0.96 42.14 29.54 68.60 2.03 44.17 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.52 -27.63 7.77 25.60 0.20 -27.43 15 8 H 0.06 3.07 6.77 -2.91 -0.02 3.05 15 9 C 0.05 2.36 2.27 -12.31 -0.03 2.34 15 10 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 11 C 0.08 3.70 5.51 86.22 0.48 4.17 15 12 N -0.68 -27.40 6.96 -518.29 -3.61 -31.01 15 13 C 0.10 3.70 6.01 85.58 0.51 4.21 15 14 C -0.18 -6.70 5.80 -19.82 -0.11 -6.81 15 15 C 0.08 2.78 7.23 22.44 0.16 2.94 15 16 F -0.14 -4.49 16.54 44.97 0.74 -3.74 15 17 C -0.16 -4.64 10.02 22.27 0.22 -4.42 15 18 C -0.09 -2.64 10.05 22.22 0.22 -2.42 15 19 C -0.13 -4.97 8.74 22.33 0.20 -4.78 15 20 C -0.04 -1.74 5.44 -19.85 -0.11 -1.84 15 21 H 0.26 13.92 8.31 -92.71 -0.77 13.15 15 22 H 0.08 4.23 6.41 -2.39 -0.02 4.21 15 23 H 0.04 1.89 8.03 -2.39 -0.02 1.87 15 24 H 0.34 12.98 8.74 -89.69 -0.78 12.20 15 25 H 0.09 2.99 7.91 -2.38 -0.02 2.97 15 26 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 27 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 28 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 29 H 0.12 4.80 7.13 -2.91 -0.02 4.78 15 Total: -1.00 -56.71 245.63 1.98 -54.72 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.39 Total: 18.89 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 2.19 Total: -32.61 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.36 Total: -81.42 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.74 Total: -3.74 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -56.71 1.98 -54.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.575 kcal (2) G-P(sol) polarization free energy of solvation -56.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds