Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.38956 * 300.00200 * 9 7 2 11 11 C 1.52895 * 109.38946 * 59.79763 * 9 7 2 12 12 N 1.47162 * 108.49366 * 170.54243 * 11 9 7 13 13 C 1.46635 * 110.24387 * 288.71746 * 12 11 9 14 14 C 1.50613 * 110.50123 * 52.47063 * 13 12 11 15 15 C 1.38955 * 118.42698 * 162.66398 * 14 13 12 16 16 F 1.35103 * 119.84066 * 359.85779 * 15 14 13 17 17 C 1.38244 * 120.32193 * 179.82815 * 15 14 13 18 18 C 1.38214 * 119.84495 * 0.02562 * 17 15 14 19 19 C 1.38045 * 119.85380 * 0.07674 * 18 17 15 20 20 C 1.37653 * 121.83012 * 342.53595 * 14 13 12 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.63684 * 290.24680 * 11 9 7 23 23 H 1.09000 * 109.63360 * 50.84443 * 11 9 7 24 24 H 1.00903 * 111.00186 * 165.29844 * 12 11 9 25 25 H 1.09003 * 109.26834 * 172.74095 * 13 12 11 26 26 H 1.09000 * 109.26606 * 292.24158 * 13 12 11 27 27 H 1.08005 * 120.07419 * 180.02562 * 17 15 14 28 28 H 1.07998 * 120.07868 * 180.02562 * 18 17 15 29 29 H 1.08002 * 119.80311 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8738 -0.6793 -0.8899 11 6 4.0187 -0.4693 1.2472 12 7 5.4722 -0.6760 1.3485 13 6 5.7626 -2.0641 1.7211 14 6 5.0603 -3.0179 0.7908 15 6 5.4917 -4.3381 0.7477 16 9 6.5206 -4.7349 1.5282 17 6 4.8729 -5.2476 -0.0895 18 6 3.8202 -4.8419 -0.8879 19 6 3.3926 -3.5300 -0.8470 20 6 4.0120 -2.6157 -0.0055 21 1 -0.4850 0.8400 -0.0004 22 1 3.8052 0.5963 1.1639 23 1 3.5285 -0.8759 2.1318 24 1 5.8842 -0.0312 2.0064 25 1 6.8379 -2.2340 1.6661 26 1 5.4223 -2.2414 2.7414 27 1 5.2112 -6.2729 -0.1194 28 1 3.3337 -5.5494 -1.5430 29 1 2.5703 -3.2137 -1.4716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -16.473132 kcal Electronic energy + Delta-G solvation = -14948.756217 eV Core-core repulsion = 12364.946813 eV Total energy + Delta-G solvation = -2583.809405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.52424 -39.33500 -36.07326 -33.42691 -31.29250 -30.52976 -28.64679 -25.29674 -23.41746 -22.80689 -21.02586 -19.14826 -17.04542 -16.86878 -16.09135 -15.49474 -15.25339 -14.93092 -14.23454 -13.98615 -13.72723 -13.19724 -12.74087 -12.65465 -12.19999 -12.00423 -11.62164 -11.15678 -11.11923 -10.53120 -10.42194 -10.05325 -9.64603 -9.21713 -8.70096 -8.31570 -7.98819 -7.89407 -6.19081 -4.20785 1.68561 1.80317 3.18096 3.32060 3.34867 4.14281 4.29863 4.62019 4.73190 5.08302 5.14841 5.23023 5.57044 5.66585 5.74170 5.83502 5.97367 6.02463 6.27906 6.41959 6.54065 6.66908 6.70769 6.88882 7.07259 7.18644 7.36515 7.52772 7.64719 7.81707 8.38744 8.83886 9.40644 10.93048 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037178 B = 0.010592 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.944429 B = 2642.888867 C = 3240.204982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.050 3.950 10 H 0.055 0.945 11 C 0.048 3.952 12 N -0.688 5.688 13 C 0.105 3.895 14 C -0.128 4.128 15 C 0.087 3.913 16 F -0.149 7.149 17 C -0.174 4.174 18 C -0.103 4.103 19 C -0.113 4.113 20 C 0.006 3.994 21 H 0.266 0.734 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.335 0.665 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 -5.064 1.162 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.031 3.969 10 H 0.073 0.927 11 C -0.080 4.080 12 N -0.318 5.318 13 C -0.024 4.024 14 C -0.129 4.129 15 C 0.067 3.933 16 F -0.128 7.128 17 C -0.193 4.193 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.006 3.994 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.152 0.848 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.373 -5.067 0.515 10.667 hybrid contribution 0.241 0.804 1.224 1.484 sum 9.613 -4.263 1.739 10.659 Atomic orbital electron populations 1.69872 1.06215 1.27190 1.49801 1.24992 0.94742 0.98930 0.94186 0.86982 0.80349 0.83674 0.78227 1.20596 1.22045 1.18286 1.21018 0.87490 0.94986 1.52013 0.89977 1.18301 0.96435 0.87751 0.94397 0.92722 1.22673 0.85102 1.00111 1.00155 1.60769 1.13955 1.03485 1.53620 1.20524 0.99011 0.88008 0.94838 1.19560 0.99159 0.92426 1.01769 1.17552 0.88347 0.93092 0.94269 1.91411 1.56843 1.91321 1.73235 1.20832 0.99604 0.99124 0.99751 1.20937 0.96078 0.96444 0.98624 1.21470 0.99932 0.92243 0.99421 1.19817 0.90561 0.97523 0.91532 0.92396 0.91926 0.94208 0.84831 0.90221 0.94315 0.85730 0.85730 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.96 55.43 0.77 -25.41 15 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 15 3 Si 0.88 20.85 24.27 -169.99 -4.13 16.72 15 4 H -0.28 -6.44 6.96 56.52 0.39 -6.04 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.26 -5.95 6.51 56.52 0.37 -5.58 15 7 C -0.52 -13.78 8.36 -34.44 -0.29 -14.07 15 8 H 0.08 2.35 7.03 -52.49 -0.37 1.98 15 9 C 0.05 1.16 1.99 -92.96 -0.19 0.98 15 10 H 0.06 1.33 7.19 -51.93 -0.37 0.95 15 11 C 0.05 1.03 5.17 -3.73 -0.02 1.01 15 12 N -0.69 -12.62 6.88 -115.17 -0.79 -13.41 15 13 C 0.11 1.84 6.01 -5.16 -0.03 1.81 15 14 C -0.13 -2.47 5.79 -104.61 -0.61 -3.08 15 15 C 0.09 1.53 7.23 -39.31 -0.28 1.25 15 16 F -0.15 -2.50 16.55 2.25 0.04 -2.46 15 17 C -0.17 -2.78 10.02 -39.59 -0.40 -3.18 15 18 C -0.10 -1.67 10.05 -39.66 -0.40 -2.06 15 19 C -0.11 -2.18 8.74 -39.43 -0.34 -2.53 15 20 C 0.01 0.13 5.43 -104.60 -0.57 -0.44 15 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.06 1.37 3.59 -51.93 -0.19 1.18 15 23 H 0.04 0.88 8.02 -51.93 -0.42 0.46 15 24 H 0.33 5.11 8.90 -39.29 -0.35 4.76 15 25 H 0.08 1.25 7.91 -51.93 -0.41 0.84 15 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.12 1.63 8.06 -52.48 -0.42 1.21 15 28 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 29 H 0.14 2.75 7.16 -52.49 -0.38 2.37 15 LS Contribution 238.84 15.07 3.60 3.60 Total: -1.00 -28.71 238.84 -6.65 -35.37 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.93 Total: 3.96 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.22 Total: -18.36 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.02 Total: -38.82 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.13 Total: 16.72 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.71 -6.65 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.895 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds