Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40104 * 125.80027 * 2 1 4 4 C 1.34955 * 107.67223 * 179.72344 * 3 2 1 5 5 N 1.36098 * 107.78717 * 0.29402 * 4 3 2 6 6 N 1.31225 * 125.79556 * 180.14170 * 2 1 3 7 7 C 1.46466 * 122.63943 * 179.83553 * 5 4 3 8 8 C 1.53067 * 108.74148 * 330.39678 * 7 5 4 9 9 H 1.08996 * 109.10445 * 164.83061 * 8 7 5 10 10 C 1.50694 * 109.05512 * 283.90543 * 8 7 5 11 11 H 1.07997 * 120.00324 * 1.81690 * 10 8 7 12 12 C 1.37882 * 120.00015 * 181.81129 * 10 8 7 13 13 N 1.31512 * 120.00189 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99936 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46854 * 90.00628 * 14 12 10 16 16 H 1.48502 * 109.47114 * 210.00044 * 14 12 10 17 17 H 1.48496 * 109.47157 * 330.00545 * 14 12 10 18 18 C 1.50276 * 111.34710 * 44.35493 * 8 7 5 19 19 O 1.21285 * 119.23658 * 144.08085 * 18 8 7 20 20 N 1.35238 * 121.52028 * 324.05678 * 18 8 7 21 21 H 1.09005 * 109.47176 * 89.99492 * 1 2 3 22 22 H 1.08999 * 109.47317 * 209.99784 * 1 2 3 23 23 H 1.09009 * 109.46652 * 330.00020 * 1 2 3 24 24 H 1.08002 * 126.16694 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.59635 * 210.61807 * 7 5 4 26 26 H 1.08999 * 109.71411 * 90.24557 * 7 5 4 27 27 H 0.96993 * 120.00326 * 179.97438 * 13 12 10 28 28 H 0.96997 * 121.23040 * 185.85098 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1363 0.0000 4 6 3.6091 0.7164 0.0062 5 7 3.6011 -0.6445 0.0034 6 7 2.2745 -1.0644 -0.0026 7 6 4.8297 -1.4418 0.0050 8 6 5.9302 -0.6508 -0.7065 9 1 6.8966 -1.1009 -0.4797 10 6 5.6956 -0.7102 -2.1939 11 1 4.8336 -1.2308 -2.5843 12 6 6.5813 -0.0999 -3.0565 13 7 7.6312 0.5337 -2.5813 14 14 6.2908 -0.1742 -4.9003 15 1 5.4674 0.9886 -5.3189 16 1 7.5954 -0.1375 -5.6088 17 1 5.5788 -1.4325 -5.2389 18 6 5.9419 0.7864 -0.2675 19 8 7.0025 1.3656 -0.1644 20 7 4.7972 1.4488 0.0148 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5139 24 1 1.9922 2.1633 -0.0004 25 1 4.6567 -2.3810 -0.5204 26 1 5.1330 -1.6477 1.0314 27 1 8.2545 0.9628 -3.1881 28 1 4.8018 2.3976 0.2163 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = 39.897105 kcal Electronic energy + Delta-G solvation = -15122.531828 eV Core-core repulsion = 12561.086782 eV Total energy + Delta-G solvation = -2561.445046 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10321 -38.41917 -34.77906 -33.91660 -32.47258 -30.57385 -28.39235 -27.36598 -24.69522 -23.20201 -21.30826 -19.86937 -18.01734 -17.04947 -16.86461 -15.66751 -15.04341 -14.75017 -14.50307 -13.62725 -13.35774 -13.02281 -12.69011 -12.57168 -12.16910 -11.91388 -11.83817 -11.38996 -11.01639 -10.75344 -10.28454 -10.04276 -9.95613 -9.64578 -8.89315 -8.58121 -8.14648 -7.48857 -6.22070 -4.40078 2.43973 2.99680 3.18414 3.20732 3.26609 3.29872 3.76420 4.05023 4.26350 4.99236 5.09088 5.38856 5.65734 5.69952 5.80512 5.85617 5.97175 6.08370 6.22465 6.27663 6.41417 6.80393 7.18800 7.38904 7.54115 7.63276 7.77875 8.06882 8.38577 8.62788 9.18234 9.27387 10.78562 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.010915 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018728 B = 2564.622297 C = 2968.723262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.075 3.925 3 C -0.319 4.319 4 C 0.348 3.652 5 N -0.369 5.369 6 N -0.297 5.297 7 C 0.141 3.859 8 C 0.020 3.980 9 H 0.088 0.912 10 C -0.537 4.537 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.846 5.846 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.524 3.476 19 O -0.496 6.496 20 N -0.663 5.663 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.142 0.858 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.267 0.733 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 0.030 4.580 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.091 4.091 3 C -0.352 4.352 4 C 0.124 3.876 5 N -0.156 5.156 6 N -0.121 5.121 7 C 0.020 3.980 8 C -0.002 4.002 9 H 0.105 0.895 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.143 4.143 13 N -0.479 5.479 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.208 1.208 17 H -0.194 1.194 18 C 0.313 3.687 19 O -0.365 6.365 20 N -0.315 5.315 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.160 0.840 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.141 -1.097 4.544 9.388 hybrid contribution -0.022 1.510 -1.139 1.891 sum -8.163 0.413 3.405 8.854 Atomic orbital electron populations 1.20072 0.87221 1.02575 1.02480 1.22045 0.96337 0.90313 1.00399 1.20138 0.89316 0.99669 1.26070 1.18077 0.88173 0.83756 0.97555 1.48663 1.05284 1.03119 1.58544 1.77081 0.85543 1.22134 1.27293 1.22048 0.79744 0.95905 1.00324 1.19331 0.95926 0.87294 0.97660 0.89473 1.20772 1.11153 1.37974 0.87558 0.91218 1.25172 0.94801 0.94512 0.99788 1.70146 1.11414 1.31163 1.35150 0.86458 0.77783 0.78824 0.84340 1.20475 1.20807 1.19444 1.21959 0.81647 0.91777 0.73268 1.90642 1.29207 1.69182 1.47511 1.43645 1.04802 1.12017 1.71074 0.90967 0.91367 0.90919 0.84038 0.88219 0.91610 0.92281 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.44 36.01 0.38 -0.40 15 2 C 0.08 1.30 7.22 -82.15 -0.59 0.71 15 3 C -0.32 -5.66 10.75 -40.05 -0.43 -6.09 15 4 C 0.35 7.06 7.65 -152.71 -1.17 5.89 15 5 N -0.37 -7.68 3.99 -60.44 -0.24 -7.92 15 6 N -0.30 -5.89 12.65 33.78 0.43 -5.47 15 7 C 0.14 2.82 6.70 -4.03 -0.03 2.80 15 8 C 0.02 0.48 2.37 -93.10 -0.22 0.26 15 9 H 0.09 2.17 8.14 -51.93 -0.42 1.75 15 10 C -0.54 -14.17 8.37 -34.44 -0.29 -14.46 15 11 H 0.07 1.86 7.73 -52.49 -0.41 1.45 15 12 C 0.07 1.77 5.29 -17.82 -0.09 1.68 15 13 N -0.85 -24.29 11.25 55.43 0.62 -23.66 15 14 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 18 C 0.52 12.82 6.31 -10.98 -0.07 12.75 15 19 O -0.50 -13.63 16.31 5.55 0.09 -13.54 15 20 N -0.66 -13.82 5.57 -11.54 -0.06 -13.88 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.07 0.71 8.14 -51.92 -0.42 0.29 15 24 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.10 1.91 8.02 -51.93 -0.42 1.50 15 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.27 7.37 8.31 -40.82 -0.34 7.04 15 28 H 0.41 7.36 8.95 -40.82 -0.37 7.00 15 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -31.73 247.51 -5.83 -37.56 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.86 Total: 4.00 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.52 Total: 3.13 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.75 Total: -50.94 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.73 -5.83 -37.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.461 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds