Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40104 * 125.80027 * 2 1 4 4 C 1.34955 * 107.67223 * 179.72344 * 3 2 1 5 5 N 1.36098 * 107.78717 * 0.29402 * 4 3 2 6 6 N 1.31225 * 125.79556 * 180.14170 * 2 1 3 7 7 C 1.46466 * 122.63943 * 179.83553 * 5 4 3 8 8 C 1.53067 * 108.74148 * 330.39678 * 7 5 4 9 9 H 1.08996 * 109.10445 * 164.83061 * 8 7 5 10 10 C 1.50694 * 109.05512 * 283.90543 * 8 7 5 11 11 H 1.07997 * 120.00324 * 1.81690 * 10 8 7 12 12 C 1.37882 * 120.00015 * 181.81129 * 10 8 7 13 13 N 1.31512 * 120.00189 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99936 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46854 * 90.00628 * 14 12 10 16 16 H 1.48502 * 109.47114 * 210.00044 * 14 12 10 17 17 H 1.48496 * 109.47157 * 330.00545 * 14 12 10 18 18 C 1.50276 * 111.34710 * 44.35493 * 8 7 5 19 19 O 1.21285 * 119.23658 * 144.08085 * 18 8 7 20 20 N 1.35238 * 121.52028 * 324.05678 * 18 8 7 21 21 H 1.09005 * 109.47176 * 89.99492 * 1 2 3 22 22 H 1.08999 * 109.47317 * 209.99784 * 1 2 3 23 23 H 1.09009 * 109.46652 * 330.00020 * 1 2 3 24 24 H 1.08002 * 126.16694 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.59635 * 210.61807 * 7 5 4 26 26 H 1.08999 * 109.71411 * 90.24557 * 7 5 4 27 27 H 0.96993 * 120.00326 * 179.97438 * 13 12 10 28 28 H 0.96997 * 121.23040 * 185.85098 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1363 0.0000 4 6 3.6091 0.7164 0.0062 5 7 3.6011 -0.6445 0.0034 6 7 2.2745 -1.0644 -0.0026 7 6 4.8297 -1.4418 0.0050 8 6 5.9302 -0.6508 -0.7065 9 1 6.8966 -1.1009 -0.4797 10 6 5.6956 -0.7102 -2.1939 11 1 4.8336 -1.2308 -2.5843 12 6 6.5813 -0.0999 -3.0565 13 7 7.6312 0.5337 -2.5813 14 14 6.2908 -0.1742 -4.9003 15 1 5.4674 0.9886 -5.3189 16 1 7.5954 -0.1375 -5.6088 17 1 5.5788 -1.4325 -5.2389 18 6 5.9419 0.7864 -0.2675 19 8 7.0025 1.3656 -0.1644 20 7 4.7972 1.4488 0.0148 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5139 24 1 1.9922 2.1633 -0.0004 25 1 4.6567 -2.3810 -0.5204 26 1 5.1330 -1.6477 1.0314 27 1 8.2545 0.9628 -3.1881 28 1 4.8018 2.3976 0.2163 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = 17.934059 kcal Electronic energy + Delta-G solvation = -15123.484217 eV Core-core repulsion = 12561.086782 eV Total energy + Delta-G solvation = -2562.397435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.64221 -40.21686 -36.52784 -35.70746 -34.27472 -32.06994 -29.92356 -28.86763 -26.46233 -24.97592 -22.96442 -21.35319 -19.79196 -18.70008 -18.61469 -17.44958 -16.77101 -16.60734 -16.06203 -15.38957 -15.05032 -14.54957 -14.17986 -13.91232 -13.61376 -13.53634 -13.22575 -12.94534 -12.89905 -12.53744 -12.16800 -11.67936 -11.58761 -11.45044 -10.89695 -10.57168 -9.61065 -9.05281 -8.27747 -6.51473 0.86592 1.33402 1.35073 1.46092 1.50254 1.74982 2.06215 2.26814 2.38416 3.00811 3.59385 3.86955 4.14391 4.25703 4.40575 4.53420 4.67450 4.88933 4.94697 4.98845 5.11123 5.25073 5.47976 5.67606 5.80937 5.94164 5.98284 6.33518 6.58806 6.89926 7.18817 7.37674 8.72242 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.010915 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018728 B = 2564.622297 C = 2968.723262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.079 3.921 3 C -0.306 4.306 4 C 0.316 3.684 5 N -0.386 5.386 6 N -0.320 5.320 7 C 0.148 3.852 8 C 0.015 3.985 9 H 0.068 0.932 10 C -0.540 4.540 11 H 0.064 0.936 12 C 0.017 3.983 13 N -0.880 5.880 14 Si 0.960 3.040 15 H -0.280 1.280 16 H -0.278 1.278 17 H -0.262 1.262 18 C 0.523 3.477 19 O -0.537 6.537 20 N -0.653 5.653 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.173 0.827 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 0.192 4.370 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.088 4.088 3 C -0.338 4.338 4 C 0.094 3.906 5 N -0.173 5.173 6 N -0.144 5.144 7 C 0.027 3.973 8 C -0.007 4.007 9 H 0.086 0.914 10 C -0.578 4.578 11 H 0.082 0.918 12 C -0.187 4.187 13 N -0.515 5.515 14 Si 0.784 3.216 15 H -0.205 1.205 16 H -0.203 1.203 17 H -0.186 1.186 18 C 0.313 3.687 19 O -0.410 6.410 20 N -0.306 5.306 21 H 0.104 0.896 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.191 0.809 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.655 -0.939 4.345 11.546 hybrid contribution 0.608 1.457 -1.016 1.877 sum -10.048 0.517 3.329 10.598 Atomic orbital electron populations 1.20289 0.83399 1.04541 1.03912 1.22926 0.98553 0.89251 0.98036 1.20647 0.88162 1.01442 1.23575 1.18463 0.88595 0.83878 0.99657 1.48747 1.05690 1.03336 1.59547 1.77086 0.85246 1.23530 1.28505 1.21880 0.78968 0.95204 1.01284 1.19235 0.96589 0.87826 0.97086 0.91420 1.20968 1.10562 1.37311 0.88951 0.91782 1.25939 0.94588 0.94266 1.03932 1.70294 1.12415 1.32445 1.36338 0.85516 0.77747 0.78859 0.79444 1.20541 1.20346 1.18563 1.21908 0.81981 0.91954 0.72824 1.90612 1.30845 1.69951 1.49611 1.43297 1.04335 1.12586 1.70353 0.89616 0.90403 0.88048 0.80910 0.87711 0.89234 0.92616 0.73898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.44 71.24 0.74 -0.50 15 2 C 0.08 2.46 7.22 43.10 0.31 2.77 15 3 C -0.31 -9.91 10.75 21.97 0.24 -9.67 15 4 C 0.32 12.33 7.65 130.76 1.00 13.33 15 5 N -0.39 -15.60 3.99 -345.13 -1.38 -16.98 15 6 N -0.32 -12.04 12.65 -47.05 -0.60 -12.64 15 7 C 0.15 5.88 6.70 86.41 0.58 6.45 15 8 C 0.01 0.73 2.37 -12.40 -0.03 0.70 15 9 H 0.07 3.51 8.14 -2.39 -0.02 3.49 15 10 C -0.54 -28.69 8.37 25.60 0.21 -28.48 15 11 H 0.06 3.41 7.73 -2.91 -0.02 3.39 15 12 C 0.02 0.93 5.29 84.66 0.45 1.38 15 13 N -0.88 -51.60 11.25 21.45 0.24 -51.36 15 14 Si 0.96 43.29 29.54 68.60 2.03 45.32 15 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 15 18 C 0.52 25.98 6.31 87.45 0.55 26.53 15 19 O -0.54 -30.36 16.31 -3.05 -0.05 -30.41 15 20 N -0.65 -26.91 5.57 -308.56 -1.72 -28.63 15 21 H 0.09 1.52 8.14 -2.38 -0.02 1.50 15 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.10 1.45 8.14 -2.38 -0.02 1.43 15 24 H 0.17 4.37 8.06 -2.91 -0.02 4.34 15 25 H 0.10 3.99 8.02 -2.39 -0.02 3.97 15 26 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 15 28 H 0.42 14.91 8.95 -92.71 -0.83 14.08 15 Total: -1.00 -68.31 247.51 2.94 -65.37 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.36 Total: 16.81 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.06 Total: 12.52 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -3.45 Total: -109.61 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.05 Total: -30.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -68.31 2.94 -65.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.302 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds