Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40110 * 125.79851 * 2 1 4 4 C 1.34961 * 107.66958 * 179.97438 * 3 2 1 5 5 N 1.36095 * 107.78680 * 0.06251 * 4 3 2 6 6 N 1.31224 * 125.79354 * 179.97438 * 2 1 3 7 7 C 1.46452 * 122.63023 * 179.88002 * 5 4 3 8 8 C 1.53073 * 108.86453 * 330.27969 * 7 5 4 9 9 H 1.09000 * 109.10359 * 283.96774 * 8 7 5 10 10 C 1.50699 * 109.10598 * 164.92781 * 8 7 5 11 11 H 1.07997 * 119.99883 * 0.02562 * 10 8 7 12 12 C 1.37873 * 119.99913 * 179.97438 * 10 8 7 13 13 N 1.31515 * 120.00358 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47313 * 120.00186 * 14 12 10 17 17 H 1.48500 * 109.47007 * 240.00027 * 14 12 10 18 18 C 1.50595 * 111.16214 * 44.32906 * 8 7 5 19 19 O 1.21288 * 119.16764 * 144.17231 * 18 8 7 20 20 N 1.35239 * 121.59393 * 324.16877 * 18 8 7 21 21 H 1.08994 * 109.47340 * 90.00357 * 1 2 3 22 22 H 1.09008 * 109.47331 * 210.00370 * 1 2 3 23 23 H 1.08997 * 109.47209 * 330.00045 * 1 2 3 24 24 H 1.07993 * 126.16278 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.59418 * 90.13088 * 7 5 4 26 26 H 1.08999 * 109.59355 * 210.42666 * 7 5 4 27 27 H 0.96998 * 120.00674 * 179.97438 * 13 12 10 28 28 H 0.96994 * 121.23291 * 185.77755 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1364 0.0000 4 6 3.6092 0.7165 0.0006 5 7 3.6010 -0.6445 -0.0005 6 7 2.2745 -1.0644 0.0005 7 6 4.8297 -1.4415 -0.0028 8 6 5.9285 -0.6549 -0.7219 9 1 5.7543 -0.7000 -1.7969 10 6 7.2647 -1.2799 -0.4136 11 1 7.3202 -2.1471 0.2277 12 6 8.4163 -0.7453 -0.9512 13 7 8.3487 0.3104 -1.7326 14 14 10.0725 -1.5204 -0.5698 15 1 9.8777 -2.6885 0.3263 16 1 10.7126 -1.9675 -1.8330 17 1 10.9438 -0.5218 0.1002 18 6 5.9405 0.7861 -0.2846 19 8 7.0016 1.3657 -0.1881 20 7 4.7972 1.4488 0.0028 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9921 2.1632 0.0004 25 1 5.1365 -1.6432 1.0235 26 1 4.6537 -2.3829 -0.5234 27 1 9.1589 0.6868 -2.1106 28 1 4.8028 2.3978 0.2035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = 52.494009 kcal Electronic energy + Delta-G solvation = -14941.962031 eV Core-core repulsion = 12381.063228 eV Total energy + Delta-G solvation = -2560.898804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17467 -38.41139 -34.65939 -34.06800 -32.30570 -30.62131 -28.47932 -27.47752 -24.43954 -23.28495 -21.26572 -19.92534 -17.90231 -17.33158 -16.27122 -16.04886 -15.12842 -14.66531 -14.45504 -13.87141 -13.34861 -12.95878 -12.74911 -12.60234 -12.38606 -12.13735 -11.75209 -11.09672 -10.83226 -10.74175 -10.26840 -10.06796 -9.92158 -9.53060 -8.76873 -8.39828 -8.25596 -7.56875 -6.15466 -4.25575 2.33391 2.89750 3.09803 3.25050 3.33499 3.36162 3.76597 3.99390 4.34908 4.94934 5.14538 5.34935 5.63267 5.70198 5.77141 5.89482 5.93929 6.00236 6.14310 6.29509 6.33262 6.96889 7.07496 7.16374 7.51044 7.70411 7.83380 8.12036 8.29631 8.69654 9.27617 9.42367 10.92375 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062933 B = 0.008005 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.811597 B = 3497.009610 C = 3819.383490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.076 3.924 3 C -0.319 4.319 4 C 0.337 3.663 5 N -0.383 5.383 6 N -0.298 5.298 7 C 0.140 3.860 8 C 0.031 3.969 9 H 0.068 0.932 10 C -0.544 4.544 11 H 0.070 0.930 12 C 0.084 3.916 13 N -0.839 5.839 14 Si 0.904 3.096 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.498 3.502 19 O -0.449 6.449 20 N -0.673 5.673 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.262 0.738 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 0.772 2.457 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C -0.352 4.352 4 C 0.114 3.886 5 N -0.171 5.171 6 N -0.121 5.121 7 C 0.020 3.980 8 C 0.009 3.991 9 H 0.086 0.914 10 C -0.582 4.582 11 H 0.088 0.912 12 C -0.125 4.125 13 N -0.471 5.471 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.285 3.715 19 O -0.314 6.314 20 N -0.328 5.328 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.161 0.839 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.445 -0.307 2.340 9.736 hybrid contribution 0.917 1.166 0.182 1.494 sum -8.528 0.859 2.521 8.935 Atomic orbital electron populations 1.20082 0.87098 1.02733 1.02501 1.22106 0.96438 0.90300 1.00229 1.20191 0.89285 0.99741 1.25957 1.18252 0.88483 0.83857 0.98018 1.49076 1.05661 1.03355 1.58985 1.77112 0.85593 1.22163 1.27263 1.22141 0.78131 0.95152 1.02583 1.19182 0.94895 0.87159 0.97891 0.91442 1.20522 0.88462 1.15229 1.33994 0.91155 1.24901 0.99501 0.94011 0.94128 1.70036 1.28856 1.19448 1.28787 0.86358 0.83220 0.79131 0.78198 1.19517 1.20846 1.20809 1.22726 0.81689 0.91100 0.75966 1.90708 1.28251 1.67876 1.44554 1.44255 1.04860 1.12045 1.71648 0.90921 0.91278 0.90838 0.83913 0.90213 0.88669 0.92760 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.44 36.01 0.38 -0.35 15 2 C 0.08 1.24 7.22 -82.15 -0.59 0.64 15 3 C -0.32 -5.32 10.75 -40.04 -0.43 -5.75 15 4 C 0.34 6.53 7.66 -152.71 -1.17 5.36 15 5 N -0.38 -7.75 4.06 -60.44 -0.25 -8.00 15 6 N -0.30 -5.68 12.65 33.78 0.43 -5.25 15 7 C 0.14 2.87 6.64 -4.03 -0.03 2.84 15 8 C 0.03 0.76 2.47 -92.94 -0.23 0.53 15 9 H 0.07 1.75 8.14 -51.93 -0.42 1.32 15 10 C -0.54 -14.32 8.36 -34.44 -0.29 -14.61 15 11 H 0.07 1.77 7.73 -52.49 -0.41 1.36 15 12 C 0.08 2.29 4.75 -17.82 -0.08 2.20 15 13 N -0.84 -24.15 10.63 55.43 0.59 -23.56 15 14 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 15 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 C 0.50 12.19 7.31 -10.83 -0.08 12.11 15 19 O -0.45 -12.60 13.87 5.55 0.08 -12.52 15 20 N -0.67 -13.54 5.58 -11.44 -0.06 -13.60 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.07 0.72 8.14 -51.92 -0.42 0.30 15 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.08 1.59 8.04 -51.93 -0.42 1.17 15 26 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 27 H 0.26 7.24 8.31 -40.82 -0.34 6.91 15 28 H 0.41 7.03 8.95 -40.82 -0.37 6.67 15 LS Contribution 245.05 15.07 3.69 3.69 Total: -1.00 -31.17 245.05 -5.93 -37.10 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.86 Total: 3.14 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.53 Total: 2.98 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.71 Total: -50.40 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.17 -5.93 -37.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.590 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds