Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40110 * 125.79851 * 2 1 4 4 C 1.34961 * 107.66958 * 179.97438 * 3 2 1 5 5 N 1.36095 * 107.78680 * 0.06251 * 4 3 2 6 6 N 1.31224 * 125.79354 * 179.97438 * 2 1 3 7 7 C 1.46452 * 122.63023 * 179.88002 * 5 4 3 8 8 C 1.53073 * 108.86453 * 330.27969 * 7 5 4 9 9 H 1.09000 * 109.10359 * 283.96774 * 8 7 5 10 10 C 1.50699 * 109.10598 * 164.92781 * 8 7 5 11 11 H 1.07997 * 119.99883 * 0.02562 * 10 8 7 12 12 C 1.37873 * 119.99913 * 179.97438 * 10 8 7 13 13 N 1.31515 * 120.00358 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99975 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47313 * 120.00186 * 14 12 10 17 17 H 1.48500 * 109.47007 * 240.00027 * 14 12 10 18 18 C 1.50595 * 111.16214 * 44.32906 * 8 7 5 19 19 O 1.21288 * 119.16764 * 144.17231 * 18 8 7 20 20 N 1.35239 * 121.59393 * 324.16877 * 18 8 7 21 21 H 1.08994 * 109.47340 * 90.00357 * 1 2 3 22 22 H 1.09008 * 109.47331 * 210.00370 * 1 2 3 23 23 H 1.08997 * 109.47209 * 330.00045 * 1 2 3 24 24 H 1.07993 * 126.16278 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.59418 * 90.13088 * 7 5 4 26 26 H 1.08999 * 109.59355 * 210.42666 * 7 5 4 27 27 H 0.96998 * 120.00674 * 179.97438 * 13 12 10 28 28 H 0.96994 * 121.23291 * 185.77755 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1364 0.0000 4 6 3.6092 0.7165 0.0006 5 7 3.6010 -0.6445 -0.0005 6 7 2.2745 -1.0644 0.0005 7 6 4.8297 -1.4415 -0.0028 8 6 5.9285 -0.6549 -0.7219 9 1 5.7543 -0.7000 -1.7969 10 6 7.2647 -1.2799 -0.4136 11 1 7.3202 -2.1471 0.2277 12 6 8.4163 -0.7453 -0.9512 13 7 8.3487 0.3104 -1.7326 14 14 10.0725 -1.5204 -0.5698 15 1 9.8777 -2.6885 0.3263 16 1 10.7126 -1.9675 -1.8330 17 1 10.9438 -0.5218 0.1002 18 6 5.9405 0.7861 -0.2846 19 8 7.0016 1.3657 -0.1881 20 7 4.7972 1.4488 0.0028 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9921 2.1632 0.0004 25 1 5.1365 -1.6432 1.0235 26 1 4.6537 -2.3829 -0.5234 27 1 9.1589 0.6868 -2.1106 28 1 4.8028 2.3978 0.2035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = 30.982289 kcal Electronic energy + Delta-G solvation = -14942.894850 eV Core-core repulsion = 12381.063228 eV Total energy + Delta-G solvation = -2561.831622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.67192 -40.20568 -36.35135 -35.85522 -34.10143 -32.10290 -29.97860 -28.93269 -26.17190 -25.06413 -22.90310 -21.37531 -19.59203 -19.01619 -18.05518 -17.79896 -16.77742 -16.47452 -16.06442 -15.50728 -15.10230 -14.56689 -14.18339 -13.83890 -13.80033 -13.54373 -13.11672 -12.88854 -12.64190 -12.50012 -11.94064 -11.74041 -11.52311 -11.43863 -10.73577 -10.41112 -9.69152 -9.09583 -8.19951 -6.34960 0.80858 1.37654 1.41669 1.46425 1.55182 1.72512 2.11723 2.22343 2.41850 3.16336 3.57333 3.88202 4.09993 4.22155 4.39006 4.54661 4.64354 4.86729 4.98019 5.06159 5.11191 5.24045 5.37817 5.64191 5.87509 5.97678 6.00433 6.35531 6.67335 6.86469 7.34720 7.46905 8.88037 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062933 B = 0.008005 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.811597 B = 3497.009610 C = 3819.383490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.081 3.919 3 C -0.300 4.300 4 C 0.306 3.694 5 N -0.401 5.401 6 N -0.320 5.320 7 C 0.152 3.848 8 C 0.028 3.972 9 H 0.043 0.957 10 C -0.556 4.556 11 H 0.078 0.922 12 C 0.032 3.968 13 N -0.874 5.874 14 Si 0.966 3.034 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.290 1.290 18 C 0.498 3.502 19 O -0.495 6.495 20 N -0.661 5.661 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.178 0.822 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.259 0.741 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 0.636 3.120 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 C -0.332 4.332 4 C 0.085 3.915 5 N -0.189 5.189 6 N -0.144 5.144 7 C 0.031 3.969 8 C 0.005 3.995 9 H 0.060 0.940 10 C -0.594 4.594 11 H 0.096 0.904 12 C -0.174 4.174 13 N -0.508 5.508 14 Si 0.791 3.209 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.216 1.216 18 C 0.286 3.714 19 O -0.363 6.363 20 N -0.316 5.316 21 H 0.108 0.892 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.195 0.805 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.424 -0.449 3.014 11.824 hybrid contribution 1.298 1.239 -0.019 1.795 sum -10.126 0.790 2.995 10.589 Atomic orbital electron populations 1.20310 0.83199 1.04565 1.04143 1.23007 0.98660 0.89225 0.97695 1.20704 0.87917 1.01570 1.23037 1.18625 0.88902 0.83808 1.00198 1.49072 1.05966 1.03605 1.60277 1.77126 0.85140 1.23624 1.28524 1.21832 0.77826 0.94952 1.02259 1.19051 0.95696 0.87920 0.96800 0.93977 1.20912 0.89538 1.15382 1.33567 0.90413 1.25756 1.03145 0.94420 0.94048 1.70181 1.29302 1.21045 1.30263 0.85387 0.78817 0.78386 0.78301 1.18031 1.20098 1.21593 1.22564 0.82131 0.91250 0.75495 1.90680 1.30070 1.68685 1.46868 1.43751 1.04302 1.12610 1.70899 0.89206 0.90512 0.88012 0.80512 0.89940 0.87541 0.93237 0.73934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.44 71.24 0.74 -0.39 15 2 C 0.08 2.37 7.22 43.10 0.31 2.68 15 3 C -0.30 -9.03 10.75 21.97 0.24 -8.80 15 4 C 0.31 11.43 7.66 130.77 1.00 12.43 15 5 N -0.40 -15.88 4.06 -345.15 -1.40 -17.28 15 6 N -0.32 -11.61 12.65 -47.05 -0.60 -12.20 15 7 C 0.15 6.23 6.64 86.41 0.57 6.80 15 8 C 0.03 1.38 2.47 -12.29 -0.03 1.35 15 9 H 0.04 2.28 8.14 -2.39 -0.02 2.26 15 10 C -0.56 -29.70 8.36 25.60 0.21 -29.49 15 11 H 0.08 3.91 7.73 -2.91 -0.02 3.89 15 12 C 0.03 1.76 4.75 84.65 0.40 2.16 15 13 N -0.87 -51.82 10.63 21.45 0.23 -51.59 15 14 Si 0.97 43.65 29.54 68.60 2.03 45.67 15 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 15 18 C 0.50 24.86 7.31 87.55 0.64 25.50 15 19 O -0.49 -28.55 13.87 -3.06 -0.04 -28.59 15 20 N -0.66 -26.37 5.58 -308.23 -1.72 -28.08 15 21 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.08 1.30 8.14 -2.38 -0.02 1.28 15 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.18 4.01 8.06 -2.91 -0.02 3.99 15 25 H 0.08 3.29 8.04 -2.39 -0.02 3.27 15 26 H 0.11 4.03 8.14 -2.39 -0.02 4.01 15 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 28 H 0.42 14.29 8.95 -92.71 -0.83 13.46 15 Total: -1.00 -68.12 245.05 2.95 -65.17 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.36 Total: 14.65 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 4.09 Total: 12.25 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.49 Total: -109.16 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.04 Total: -28.59 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.12 2.95 -65.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.155 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds