Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50703 * 112.95339 * 309.38798 * 9 7 2 11 11 C 1.38219 * 120.01025 * 110.33990 * 10 9 7 12 12 C 1.38223 * 120.02238 * 179.97438 * 11 10 9 13 13 C 1.38266 * 120.05213 * 0.02562 * 12 11 10 14 14 C 1.38180 * 120.02754 * 359.97438 * 13 12 11 15 15 C 1.38440 * 120.01043 * 290.05186 * 10 9 7 16 16 F 1.35101 * 120.02685 * 0.02562 * 15 10 9 17 17 C 1.53935 * 113.75933 * 177.74001 * 9 7 2 18 18 C 1.53930 * 86.33955 * 269.40418 * 17 9 7 19 19 N 1.47961 * 113.75917 * 81.03207 * 9 7 2 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.99111 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.97247 * 179.97438 * 12 11 10 23 23 H 1.08001 * 119.98918 * 179.97438 * 13 12 11 24 24 H 1.07994 * 120.01642 * 179.97438 * 14 13 12 25 25 H 1.09008 * 113.73119 * 23.76219 * 17 9 7 26 26 H 1.08999 * 113.73222 * 155.03975 * 17 9 7 27 27 H 1.09001 * 113.76186 * 90.59802 * 18 17 9 28 28 H 1.09004 * 113.75799 * 221.96464 * 18 17 9 29 29 H 1.00905 * 110.99669 * 202.51897 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.1898 -2.5700 1.0625 11 6 -1.1468 -2.5503 0.7112 12 6 -2.1202 -2.6157 1.6904 13 6 -1.7582 -2.7004 3.0221 14 6 -0.4225 -2.7203 3.3756 15 6 0.5536 -2.6608 2.3951 16 9 1.8598 -2.6855 2.7392 17 6 2.1602 -3.7402 -0.0595 18 6 2.0434 -3.6370 -1.5909 19 7 0.7758 -2.9072 -1.3459 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4308 -2.4837 -0.3286 22 1 -3.1644 -2.5998 1.4150 23 1 -2.5196 -2.7511 3.7864 24 1 -0.1399 -2.7861 4.4159 25 1 3.1678 -3.5625 0.3166 26 1 1.7024 -4.6379 0.3560 27 1 2.8202 -3.0258 -2.0505 28 1 1.9078 -4.5982 -2.0868 29 1 -0.0016 -3.5465 -1.2748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 19.945679 kcal Electronic energy + Delta-G solvation = -15340.149704 eV Core-core repulsion = 12757.919537 eV Total energy + Delta-G solvation = -2582.230167 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.76854 -39.06330 -37.11892 -32.44662 -30.22710 -29.55862 -26.57903 -25.73286 -23.50439 -21.63669 -21.01730 -19.00131 -16.92271 -16.16528 -15.51847 -15.17924 -14.62496 -14.39750 -13.94486 -13.51395 -13.10380 -12.52635 -12.29178 -11.93084 -11.72732 -11.39805 -11.29489 -10.91348 -10.84255 -10.52723 -10.40330 -10.07345 -9.46864 -9.20620 -8.55521 -7.95490 -7.59749 -7.13275 -5.97246 -4.11581 2.15492 2.24471 3.31969 3.38193 3.41461 4.41703 4.58438 5.03750 5.29576 5.46034 5.61665 5.68629 5.75351 5.83491 5.99827 6.19742 6.28079 6.40773 6.62536 6.81149 6.85551 6.95573 6.99741 7.07799 7.29192 7.35694 7.65426 7.85278 7.91735 8.18656 8.69337 8.89434 9.55349 11.03656 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.014778 C = 0.012235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.939723 B = 1894.281455 C = 2287.958961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.493 4.493 8 H 0.063 0.937 9 C 0.256 3.744 10 C -0.040 4.040 11 C -0.048 4.048 12 C -0.145 4.145 13 C -0.121 4.121 14 C -0.173 4.173 15 C 0.098 3.902 16 F -0.142 7.142 17 C -0.188 4.188 18 C 0.023 3.977 19 N -0.645 5.645 20 H 0.260 0.740 21 H 0.126 0.874 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -5.861 2.867 6.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.124 4.124 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.168 3.832 10 C -0.042 4.042 11 C -0.066 4.066 12 C -0.163 4.163 13 C -0.139 4.139 14 C -0.192 4.192 15 C 0.078 3.922 16 F -0.120 7.120 17 C -0.227 4.227 18 C -0.107 4.107 19 N -0.273 5.273 20 H 0.070 0.930 21 H 0.144 0.856 22 H 0.129 0.871 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.229 -5.044 2.370 6.002 hybrid contribution 0.591 0.273 0.752 0.995 sum -1.638 -4.771 3.122 5.932 Atomic orbital electron populations 1.69980 1.05726 1.26401 1.47405 1.24943 0.94861 0.98992 0.93651 0.86593 0.79964 0.83330 0.78126 1.20509 1.21259 1.19853 1.20412 0.92069 0.87937 1.52732 0.91890 1.18808 0.87796 0.92792 0.83828 1.20150 0.95828 0.95134 0.93091 1.20672 0.91265 0.95126 0.99542 1.20986 0.98898 1.03359 0.93065 1.20620 0.94634 1.02573 0.96101 1.20847 0.93111 1.07103 0.98172 1.17473 0.77723 1.03927 0.93075 1.91420 1.33892 1.93923 1.92792 1.24735 1.01763 0.99156 0.97024 1.23301 0.96339 0.96388 0.94693 1.65956 1.02129 1.31382 1.27795 0.93016 0.85586 0.87052 0.86884 0.86506 0.92174 0.92516 0.89415 0.93443 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.82 11.10 55.43 0.61 -23.20 15 2 C 0.08 2.24 5.33 -17.82 -0.09 2.14 15 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.49 -13.42 8.25 -34.44 -0.28 -13.70 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.26 6.21 0.65 -132.85 -0.09 6.13 15 10 C -0.04 -0.93 3.67 -104.55 -0.38 -1.32 15 11 C -0.05 -1.03 7.82 -39.59 -0.31 -1.34 15 12 C -0.14 -2.71 10.04 -39.58 -0.40 -3.11 15 13 C -0.12 -2.15 10.04 -39.59 -0.40 -2.55 15 14 C -0.17 -3.37 10.03 -39.51 -0.40 -3.77 15 15 C 0.10 2.22 7.05 -39.42 -0.28 1.94 15 16 F -0.14 -3.30 16.25 2.25 0.04 -3.27 15 17 C -0.19 -3.99 6.80 -25.79 -0.18 -4.17 15 18 C 0.02 0.46 8.64 -2.58 -0.02 0.44 15 19 N -0.65 -14.72 7.82 -104.95 -0.82 -15.54 15 20 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 21 H 0.13 2.77 6.93 -52.49 -0.36 2.40 15 22 H 0.11 1.76 8.06 -52.49 -0.42 1.34 15 23 H 0.11 1.62 8.06 -52.49 -0.42 1.20 15 24 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 25 H 0.06 1.29 8.09 -51.92 -0.42 0.87 15 26 H 0.06 1.12 8.09 -51.93 -0.42 0.70 15 27 H 0.09 1.81 8.14 -51.93 -0.42 1.38 15 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 29 H 0.30 6.29 7.30 -39.29 -0.29 6.01 15 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -28.80 251.35 -7.38 -36.18 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.15 Total: 4.90 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.83 Total: -19.31 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.21 Total: -38.74 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.80 -7.38 -36.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.121 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds