Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50703 * 112.95339 * 309.38798 * 9 7 2 11 11 C 1.38219 * 120.01025 * 110.33990 * 10 9 7 12 12 C 1.38223 * 120.02238 * 179.97438 * 11 10 9 13 13 C 1.38266 * 120.05213 * 0.02562 * 12 11 10 14 14 C 1.38180 * 120.02754 * 359.97438 * 13 12 11 15 15 C 1.38440 * 120.01043 * 290.05186 * 10 9 7 16 16 F 1.35101 * 120.02685 * 0.02562 * 15 10 9 17 17 C 1.53935 * 113.75933 * 177.74001 * 9 7 2 18 18 C 1.53930 * 86.33955 * 269.40418 * 17 9 7 19 19 N 1.47961 * 113.75917 * 81.03207 * 9 7 2 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.99111 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.97247 * 179.97438 * 12 11 10 23 23 H 1.08001 * 119.98918 * 179.97438 * 13 12 11 24 24 H 1.07994 * 120.01642 * 179.97438 * 14 13 12 25 25 H 1.09008 * 113.73119 * 23.76219 * 17 9 7 26 26 H 1.08999 * 113.73222 * 155.03975 * 17 9 7 27 27 H 1.09001 * 113.76186 * 90.59802 * 18 17 9 28 28 H 1.09004 * 113.75799 * 221.96464 * 18 17 9 29 29 H 1.00905 * 110.99669 * 202.51897 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.1898 -2.5700 1.0625 11 6 -1.1468 -2.5503 0.7112 12 6 -2.1202 -2.6157 1.6904 13 6 -1.7582 -2.7004 3.0221 14 6 -0.4225 -2.7203 3.3756 15 6 0.5536 -2.6608 2.3951 16 9 1.8598 -2.6855 2.7392 17 6 2.1602 -3.7402 -0.0595 18 6 2.0434 -3.6370 -1.5909 19 7 0.7758 -2.9072 -1.3459 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4308 -2.4837 -0.3286 22 1 -3.1644 -2.5998 1.4150 23 1 -2.5196 -2.7511 3.7864 24 1 -0.1399 -2.7861 4.4159 25 1 3.1678 -3.5625 0.3166 26 1 1.7024 -4.6379 0.3560 27 1 2.8202 -3.0258 -2.0505 28 1 1.9078 -4.5982 -2.0868 29 1 -0.0016 -3.5465 -1.2748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 1.756075 kcal Electronic energy + Delta-G solvation = -15340.938464 eV Core-core repulsion = 12757.919537 eV Total energy + Delta-G solvation = -2583.018927 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.48261 -40.74712 -38.69749 -34.45012 -31.82676 -31.12242 -28.44001 -27.50352 -25.27647 -23.20841 -22.59580 -20.82379 -18.58585 -18.03528 -17.14830 -16.83633 -16.53941 -16.16424 -15.45095 -15.28163 -14.67360 -14.32853 -14.09479 -13.62269 -13.39076 -13.01689 -12.93468 -12.78986 -12.59503 -12.35558 -12.12313 -11.76388 -11.25209 -11.02302 -10.56127 -9.53505 -9.21835 -8.88805 -7.98593 -6.19693 0.57437 0.71013 1.39413 1.40965 1.49081 2.43168 3.01129 3.12826 3.66047 3.76628 4.03027 4.10802 4.17146 4.34418 4.46413 4.65734 4.73823 4.85547 4.95642 5.20329 5.27356 5.30361 5.42975 5.50683 5.66111 5.74021 5.75915 6.01991 6.27322 6.34854 6.80607 7.01515 7.48211 8.97521 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.014778 C = 0.012235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.939723 B = 1894.281455 C = 2287.958961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.046 0.954 9 C 0.240 3.760 10 C -0.062 4.062 11 C -0.064 4.064 12 C -0.140 4.140 13 C -0.110 4.110 14 C -0.172 4.172 15 C 0.062 3.938 16 F -0.156 7.156 17 C -0.180 4.180 18 C 0.031 3.969 19 N -0.664 5.664 20 H 0.257 0.743 21 H 0.114 0.886 22 H 0.144 0.856 23 H 0.158 0.842 24 H 0.143 0.857 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -6.312 3.654 8.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.151 3.849 10 C -0.064 4.064 11 C -0.082 4.082 12 C -0.158 4.158 13 C -0.128 4.128 14 C -0.191 4.191 15 C 0.043 3.957 16 F -0.135 7.135 17 C -0.219 4.219 18 C -0.098 4.098 19 N -0.292 5.292 20 H 0.066 0.934 21 H 0.132 0.868 22 H 0.162 0.838 23 H 0.176 0.824 24 H 0.161 0.839 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.506 -5.504 3.151 7.247 hybrid contribution 0.948 0.366 0.524 1.143 sum -2.558 -5.139 3.675 6.816 Atomic orbital electron populations 1.70089 1.06299 1.26480 1.48141 1.25518 0.95695 1.01335 0.93802 0.85819 0.78862 0.80451 0.78018 1.20268 1.20893 1.20033 1.20621 0.91608 0.89955 1.52786 0.93621 1.18792 0.88890 0.92434 0.84771 1.20142 0.96307 0.96816 0.93183 1.20689 0.91371 0.96361 0.99809 1.21383 0.99922 1.01451 0.93006 1.21121 0.94856 1.00092 0.96742 1.21233 0.93266 1.05728 0.98841 1.17889 0.77907 1.06089 0.93858 1.91373 1.34947 1.94288 1.92854 1.24635 1.00618 0.98638 0.97973 1.23303 0.94843 0.97569 0.94126 1.65745 1.03503 1.32621 1.27299 0.93384 0.86779 0.83814 0.82430 0.83937 0.93344 0.91188 0.90486 0.89824 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.65 11.10 21.45 0.24 -48.41 15 2 C 0.04 2.23 5.33 84.66 0.45 2.69 15 3 Si 0.94 44.54 29.54 68.60 2.03 46.57 15 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 7 C -0.51 -28.38 8.25 25.60 0.21 -28.17 15 8 H 0.05 2.60 7.81 -2.91 -0.02 2.57 15 9 C 0.24 11.75 0.65 2.14 0.00 11.75 15 10 C -0.06 -2.91 3.67 -19.82 -0.07 -2.98 15 11 C -0.06 -2.70 7.82 22.26 0.17 -2.53 15 12 C -0.14 -4.81 10.04 22.27 0.22 -4.59 15 13 C -0.11 -3.50 10.04 22.26 0.22 -3.27 15 14 C -0.17 -6.27 10.03 22.31 0.22 -6.04 15 15 C 0.06 2.79 7.05 22.38 0.16 2.94 15 16 F -0.16 -7.36 16.25 44.97 0.73 -6.62 15 17 C -0.18 -7.65 6.80 31.24 0.21 -7.44 15 18 C 0.03 1.24 8.64 86.34 0.75 1.99 15 19 N -0.66 -30.22 7.82 -485.94 -3.80 -34.02 15 20 H 0.26 13.87 8.31 -92.70 -0.77 13.10 15 21 H 0.11 5.00 6.93 -2.91 -0.02 4.98 15 22 H 0.14 3.96 8.06 -2.91 -0.02 3.94 15 23 H 0.16 3.60 8.06 -2.91 -0.02 3.58 15 24 H 0.14 4.34 8.06 -2.91 -0.02 4.32 15 25 H 0.05 2.12 8.09 -2.38 -0.02 2.10 15 26 H 0.07 2.74 8.09 -2.39 -0.02 2.72 15 27 H 0.08 3.18 8.14 -2.39 -0.02 3.16 15 28 H 0.08 2.67 8.14 -2.38 -0.02 2.65 15 29 H 0.31 12.93 7.30 -89.69 -0.65 12.27 15 Total: -1.00 -61.82 251.35 2.25 -59.57 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.51 Total: 18.58 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 2.55 Total: -35.66 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.56 Total: -82.43 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.73 Total: -6.62 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -61.82 2.25 -59.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.322 kcal (2) G-P(sol) polarization free energy of solvation -61.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds