Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35652 * 116.99918 * 2 1 4 4 C 1.39520 * 119.83616 * 359.97438 * 3 2 1 5 5 C 1.36402 * 120.44501 * 180.02562 * 4 3 2 6 6 C 1.40036 * 120.10135 * 359.97438 * 5 4 3 7 7 C 1.47192 * 120.16856 * 179.97438 * 6 5 4 8 8 O 1.21892 * 119.99870 * 185.79895 * 7 6 5 9 9 C 1.41726 * 119.99746 * 5.80333 * 7 6 5 10 10 H 1.07993 * 120.00077 * 359.97438 * 9 7 6 11 11 C 1.40323 * 119.99892 * 179.72820 * 9 7 6 12 12 N 1.30538 * 119.99742 * 0.26452 * 11 9 7 13 13 Si 1.86794 * 120.00078 * 180.27464 * 11 9 7 14 14 H 1.48501 * 109.47534 * 89.99594 * 13 11 9 15 15 H 1.48506 * 109.47158 * 209.99668 * 13 11 9 16 16 H 1.48506 * 109.47155 * 329.99204 * 13 11 9 17 17 C 1.40928 * 119.66807 * 0.25584 * 6 5 4 18 18 N 1.38720 * 120.22152 * 179.72692 * 17 6 5 19 19 C 1.38657 * 119.83646 * 180.02562 * 3 2 1 20 20 H 1.08998 * 109.47086 * 300.00417 * 1 2 3 21 21 H 1.08999 * 109.47358 * 60.00221 * 1 2 3 22 22 H 1.09001 * 109.46950 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.77559 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.95330 * 179.97438 * 5 4 3 25 25 H 0.96996 * 119.99996 * 179.97438 * 12 11 9 26 26 H 0.96996 * 119.99486 * 24.11497 * 18 17 6 27 27 H 0.96992 * 120.00233 * 204.11546 * 18 17 6 28 28 H 1.08005 * 120.05000 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2816 2.3766 -0.0005 5 6 1.8879 3.5985 -0.0011 6 6 3.2853 3.6891 -0.0005 7 6 3.9411 5.0069 -0.0017 8 8 5.1529 5.0844 -0.1079 9 6 3.1635 6.1854 0.1208 10 1 2.0898 6.1166 0.2145 11 6 3.7892 7.4414 0.1254 12 7 5.0869 7.5245 0.0118 13 14 2.7650 8.9944 0.2946 14 1 2.6201 9.3378 1.7320 15 1 3.4385 10.1113 -0.4157 16 1 1.4223 8.7689 -0.2984 17 6 4.0606 2.5123 -0.0049 18 7 5.4457 2.5887 -0.0102 19 6 3.4297 1.2773 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2035 2.3128 -0.0014 24 1 1.2893 4.4974 -0.0019 25 1 5.5194 8.3927 0.0146 26 1 5.8890 3.3806 0.3323 27 1 5.9709 1.8504 -0.3562 28 1 4.0162 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260603871.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -76.075796 kcal Electronic energy + Delta-G solvation = -14496.497820 eV Core-core repulsion = 11897.731060 eV Total energy + Delta-G solvation = -2598.766760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01948 -39.37744 -37.49279 -35.15520 -34.50102 -31.66012 -29.85378 -28.45690 -27.73306 -24.14092 -22.97689 -21.34877 -19.01054 -18.52778 -17.82149 -17.38831 -16.56014 -16.35561 -16.26305 -15.51787 -15.01696 -14.61388 -14.44924 -14.00159 -13.37284 -13.30819 -13.22933 -12.88109 -12.70528 -12.32442 -12.09473 -12.02773 -11.58204 -11.02500 -10.93316 -9.47364 -9.16241 -8.39371 -8.25455 -6.97186 0.38859 0.77119 1.39683 1.39927 1.55631 2.23624 2.28630 2.39688 2.96026 3.38996 3.83170 4.00432 4.29209 4.34702 4.49434 4.49734 4.67988 4.75951 4.82333 5.09094 5.26058 5.41273 5.48708 5.72929 5.84387 6.02621 6.56014 6.71816 6.81820 6.85046 7.25320 8.32784 8.55469 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039166 B = 0.007968 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.733989 B = 3513.175608 C = 4209.353781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.170 3.830 4 C -0.268 4.268 5 C -0.015 4.015 6 C -0.264 4.264 7 C 0.380 3.620 8 O -0.589 6.589 9 C -0.549 4.549 10 H 0.089 0.911 11 C 0.026 3.974 12 N -0.787 5.787 13 Si 0.991 3.009 14 H -0.260 1.260 15 H -0.270 1.270 16 H -0.248 1.248 17 C 0.264 3.736 18 N -0.859 5.859 19 C -0.253 4.253 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.123 0.877 23 H 0.152 0.848 24 H 0.132 0.868 25 H 0.279 0.721 26 H 0.405 0.595 27 H 0.397 0.603 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -8.878 0.431 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.123 3.877 4 C -0.288 4.288 5 C -0.034 4.034 6 C -0.270 4.270 7 C 0.281 3.719 8 O -0.483 6.483 9 C -0.580 4.580 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.416 5.416 13 Si 0.810 3.190 14 H -0.185 1.185 15 H -0.195 1.195 16 H -0.171 1.171 17 C 0.154 3.846 18 N -0.405 5.405 19 C -0.277 4.277 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.142 0.858 23 H 0.170 0.830 24 H 0.150 0.850 25 H 0.090 0.910 26 H 0.243 0.757 27 H 0.227 0.773 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.773 -8.960 0.377 12.545 hybrid contribution 0.104 0.850 0.014 0.856 sum -8.669 -8.110 0.391 11.877 Atomic orbital electron populations 1.23371 0.76341 1.05544 1.02393 1.85940 1.23635 1.26522 1.88210 1.18911 0.91473 0.84494 0.92836 1.20920 1.00785 0.91194 1.15900 1.20893 0.92786 0.97955 0.91739 1.21157 0.95213 0.95355 1.15301 1.18467 0.88323 0.87693 0.77411 1.90223 1.17234 1.88608 1.52254 1.21369 0.96451 0.92508 1.47692 0.89279 1.27167 0.96007 1.04648 0.91415 1.70088 1.12031 1.27192 1.32323 0.85113 0.79084 0.75295 0.79510 1.18487 1.19507 1.17090 1.17849 0.85150 0.91973 0.89603 1.42787 1.02918 1.24293 1.70462 1.19888 0.92472 0.96226 1.19086 0.91769 0.91796 0.85849 0.83002 0.85020 0.91029 0.75746 0.77332 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.80 113.37 1.11 1.43 15 2 O -0.33 -9.39 10.48 -89.68 -0.94 -10.33 15 3 C 0.17 5.82 6.70 22.68 0.15 5.97 15 4 C -0.27 -9.06 8.96 22.15 0.20 -8.86 15 5 C -0.01 -0.61 9.37 22.28 0.21 -0.40 15 6 C -0.26 -13.04 5.91 -19.83 -0.12 -13.15 15 7 C 0.38 22.24 6.88 25.49 0.18 22.41 15 8 O -0.59 -37.46 12.36 -4.97 -0.06 -37.52 15 9 C -0.55 -30.86 8.84 23.64 0.21 -30.65 15 10 H 0.09 4.50 6.05 -2.91 -0.02 4.48 15 11 C 0.03 1.42 5.50 85.39 0.47 1.89 15 12 N -0.79 -46.21 11.73 21.88 0.26 -45.95 15 13 Si 0.99 39.50 29.56 68.60 2.03 41.53 15 14 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 15 H -0.27 -10.35 7.11 99.48 0.71 -9.65 15 16 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 17 C 0.26 11.65 6.77 38.82 0.26 11.92 15 18 N -0.86 -36.08 8.49 -50.83 -0.43 -36.51 15 19 C -0.25 -9.48 9.86 22.48 0.22 -9.26 15 20 H 0.06 1.07 7.65 -2.39 -0.02 1.05 15 21 H 0.06 1.06 7.64 -2.39 -0.02 1.04 15 22 H 0.12 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.15 3.93 6.26 -2.91 -0.02 3.91 15 24 H 0.13 5.19 6.23 -2.91 -0.02 5.17 15 25 H 0.28 14.72 8.29 -92.71 -0.77 13.95 15 26 H 0.41 19.47 6.09 -92.71 -0.56 18.90 15 27 H 0.40 13.41 8.90 -92.71 -0.83 12.58 15 28 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -71.38 245.83 3.57 -67.81 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.17 Total: 39.68 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 2.89 Total: -18.70 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -0.18 Total: -82.46 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.00 Total: -47.85 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -71.38 3.57 -67.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603871.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.266 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds