Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30940 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48502 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 300.00168 * 3 2 1 6 6 H 1.48501 * 109.47419 * 60.00111 * 3 2 1 7 7 C 1.39867 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 199.92673 * 7 2 1 9 9 C 1.41075 * 119.99520 * 19.92639 * 7 2 1 10 10 C 1.41991 * 121.00600 * 37.86946 * 9 7 2 11 11 O 1.35280 * 120.63360 * 359.97438 * 10 9 7 12 12 N 1.32355 * 118.72410 * 179.72586 * 10 9 7 13 13 C 1.32674 * 120.92116 * 0.50984 * 12 10 9 14 14 N 1.37953 * 118.86556 * 179.75474 * 13 12 10 15 15 N 1.32788 * 122.26292 * 359.47209 * 13 12 10 16 16 C 1.31900 * 121.17595 * 0.25821 * 15 13 12 17 17 C 1.50700 * 120.53959 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49897 * 8.74863 * 17 16 15 19 19 C 1.53001 * 117.49993 * 300.09102 * 17 16 15 20 20 H 0.96993 * 120.00119 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00001 * 94.23910 * 11 10 9 22 22 H 0.97006 * 119.99880 * 179.72732 * 14 13 12 23 23 H 0.97001 * 120.00384 * 359.45422 * 14 13 12 24 24 H 1.08997 * 115.55194 * 154.41983 * 17 16 15 25 25 H 1.09004 * 117.49836 * 0.02562 * 18 17 16 26 26 H 1.08998 * 117.50124 * 145.02193 * 18 17 16 27 27 H 1.08997 * 117.50312 * 214.98133 * 19 17 16 28 28 H 1.09003 * 117.49564 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.7034 1.3465 0.0006 5 1 1.8845 2.3965 -1.2125 6 1 1.8846 2.3965 1.2125 7 6 2.0088 -1.2112 -0.0005 8 1 3.0403 -1.2393 0.3182 9 6 1.3668 -2.3962 -0.4175 10 6 0.4473 -2.3881 -1.4994 11 8 0.1656 -1.2394 -2.1560 12 7 -0.1250 -3.5269 -1.8563 13 6 0.1434 -4.6558 -1.2130 14 7 -0.4811 -5.8175 -1.6174 15 7 0.9965 -4.7069 -0.1967 16 6 1.6192 -3.6241 0.2272 17 6 2.5842 -3.6984 1.3823 18 6 2.9627 -5.0881 1.8983 19 6 2.0413 -4.1888 2.7260 20 1 -0.4850 0.8400 0.0004 21 1 0.7022 -1.0972 -2.9478 22 1 -0.2940 -6.6529 -1.1612 23 1 -1.1104 -5.7983 -2.3554 24 1 3.3543 -2.9273 1.4018 25 1 2.5141 -5.9487 1.4020 26 1 3.9817 -5.2312 2.2577 27 1 2.4544 -3.7406 3.6296 28 1 0.9859 -4.4573 2.7746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260638246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 33.318072 kcal Electronic energy + Delta-G solvation = -14963.926382 eV Core-core repulsion = 12402.196047 eV Total energy + Delta-G solvation = -2561.730335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42460 -36.60881 -35.99859 -33.71614 -32.69728 -31.17251 -29.42754 -25.03352 -23.55470 -21.79486 -21.45702 -20.03100 -17.78486 -17.30053 -16.35009 -15.52701 -15.20269 -14.68039 -14.22201 -13.88667 -13.37468 -13.18674 -12.67819 -11.82288 -11.45055 -11.17204 -10.89997 -10.80464 -10.68441 -10.43133 -10.27851 -9.68064 -9.39313 -9.13211 -8.75970 -8.65650 -7.74937 -7.03036 -6.66675 -4.22320 2.51486 2.72203 3.13081 3.16157 3.17143 4.00347 4.34912 4.57607 4.79366 5.17225 5.35659 5.50695 5.71210 5.85082 6.03620 6.24277 6.41518 6.48978 6.79370 6.83319 6.96374 7.19636 7.24069 7.39378 8.14473 8.23144 8.36284 8.47655 8.79138 8.93488 9.09958 9.84915 10.31291 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.012709 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.915612 B = 2202.558062 C = 3092.969808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.461 4.461 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.309 3.691 11 O -0.448 6.448 12 N -0.577 5.577 13 C 0.468 3.532 14 N -0.851 5.851 15 N -0.549 5.549 16 C 0.120 3.880 17 C -0.066 4.066 18 C -0.176 4.176 19 C -0.167 4.167 20 H 0.279 0.721 21 H 0.364 0.636 22 H 0.398 0.602 23 H 0.397 0.603 24 H 0.115 0.885 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -3.431 0.174 4.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.492 4.492 8 H 0.100 0.900 9 C -0.013 4.013 10 C 0.118 3.882 11 O -0.249 6.249 12 N -0.310 5.310 13 C 0.112 3.888 14 N -0.404 5.404 15 N -0.271 5.271 16 C -0.027 4.027 17 C -0.085 4.085 18 C -0.213 4.213 19 C -0.205 4.205 20 H 0.090 0.910 21 H 0.218 0.782 22 H 0.226 0.774 23 H 0.226 0.774 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.337 -3.868 0.346 4.533 hybrid contribution 0.643 1.355 -0.309 1.532 sum 2.980 -2.513 0.038 3.899 Atomic orbital electron populations 1.69753 1.07595 1.29207 1.32128 1.25681 0.94432 1.00537 0.92747 0.86391 0.80880 0.81717 0.78431 1.18625 1.19863 1.20312 1.18969 0.98607 0.90829 1.40802 0.90018 1.18758 0.94284 0.94382 0.93889 1.19190 0.94558 0.82783 0.91627 1.84885 1.63050 1.35038 1.41893 1.66680 1.29855 0.99075 1.35346 1.18149 0.93833 0.85566 0.91254 1.41031 1.51794 1.06394 1.41180 1.66820 1.11804 1.33497 1.14982 1.20250 0.98512 0.88377 0.95603 1.20491 0.99330 0.96886 0.91767 1.22878 0.98941 0.95265 1.04248 1.22813 0.99466 1.04111 0.94133 0.90979 0.78249 0.77387 0.77433 0.86745 0.88239 0.89894 0.89480 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.18 11.19 55.54 0.62 -19.56 15 2 C 0.09 2.15 4.49 -17.32 -0.08 2.07 15 3 Si 0.90 18.40 29.60 -169.99 -5.03 13.37 15 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.46 -11.72 8.18 -37.90 -0.31 -12.03 15 8 H 0.08 1.97 6.89 -52.49 -0.36 1.61 15 9 C 0.00 -0.11 5.40 -106.35 -0.57 -0.69 15 10 C 0.31 8.12 7.33 -15.89 -0.12 8.01 15 11 O -0.45 -11.04 10.53 -17.53 -0.18 -11.22 15 12 N -0.58 -14.73 10.45 -13.45 -0.14 -14.87 15 13 C 0.47 11.11 8.65 -322.85 -2.79 8.31 15 14 N -0.85 -15.65 9.04 29.75 0.27 -15.38 15 15 N -0.55 -13.11 9.48 -9.66 -0.09 -13.20 15 16 C 0.12 2.93 6.55 -81.53 -0.53 2.39 15 17 C -0.07 -1.36 5.59 -91.77 -0.51 -1.87 15 18 C -0.18 -3.06 10.04 -26.70 -0.27 -3.33 15 19 C -0.17 -3.05 10.24 -26.70 -0.27 -3.32 15 20 H 0.28 6.85 8.30 -40.82 -0.34 6.51 15 21 H 0.36 7.20 9.06 45.56 0.41 7.62 15 22 H 0.40 6.32 8.94 -40.82 -0.36 5.95 15 23 H 0.40 6.50 8.94 -40.82 -0.36 6.14 15 24 H 0.11 2.29 6.86 -51.93 -0.36 1.94 15 25 H 0.10 1.81 7.61 -51.93 -0.40 1.42 15 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 LS Contribution 249.09 15.07 3.75 3.75 Total: -1.00 -30.49 249.09 -8.09 -38.58 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -1.83 Total: 18.99 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -5.46 Total: -0.45 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.66 Total: -63.02 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.18 Total: -11.22 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.49 -8.09 -38.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.899 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds