Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30940 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48502 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 300.00168 * 3 2 1 6 6 H 1.48501 * 109.47419 * 60.00111 * 3 2 1 7 7 C 1.39867 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 199.92673 * 7 2 1 9 9 C 1.41075 * 119.99520 * 19.92639 * 7 2 1 10 10 C 1.41991 * 121.00600 * 37.86946 * 9 7 2 11 11 O 1.35280 * 120.63360 * 359.97438 * 10 9 7 12 12 N 1.32355 * 118.72410 * 179.72586 * 10 9 7 13 13 C 1.32674 * 120.92116 * 0.50984 * 12 10 9 14 14 N 1.37953 * 118.86556 * 179.75474 * 13 12 10 15 15 N 1.32788 * 122.26292 * 359.47209 * 13 12 10 16 16 C 1.31900 * 121.17595 * 0.25821 * 15 13 12 17 17 C 1.50700 * 120.53959 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49897 * 8.74863 * 17 16 15 19 19 C 1.53001 * 117.49993 * 300.09102 * 17 16 15 20 20 H 0.96993 * 120.00119 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00001 * 94.23910 * 11 10 9 22 22 H 0.97006 * 119.99880 * 179.72732 * 14 13 12 23 23 H 0.97001 * 120.00384 * 359.45422 * 14 13 12 24 24 H 1.08997 * 115.55194 * 154.41983 * 17 16 15 25 25 H 1.09004 * 117.49836 * 0.02562 * 18 17 16 26 26 H 1.08998 * 117.50124 * 145.02193 * 18 17 16 27 27 H 1.08997 * 117.50312 * 214.98133 * 19 17 16 28 28 H 1.09003 * 117.49564 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.7034 1.3465 0.0006 5 1 1.8845 2.3965 -1.2125 6 1 1.8846 2.3965 1.2125 7 6 2.0088 -1.2112 -0.0005 8 1 3.0403 -1.2393 0.3182 9 6 1.3668 -2.3962 -0.4175 10 6 0.4473 -2.3881 -1.4994 11 8 0.1656 -1.2394 -2.1560 12 7 -0.1250 -3.5269 -1.8563 13 6 0.1434 -4.6558 -1.2130 14 7 -0.4811 -5.8175 -1.6174 15 7 0.9965 -4.7069 -0.1967 16 6 1.6192 -3.6241 0.2272 17 6 2.5842 -3.6984 1.3823 18 6 2.9627 -5.0881 1.8983 19 6 2.0413 -4.1888 2.7260 20 1 -0.4850 0.8400 0.0004 21 1 0.7022 -1.0972 -2.9478 22 1 -0.2940 -6.6529 -1.1612 23 1 -1.1104 -5.7983 -2.3554 24 1 3.3543 -2.9273 1.4018 25 1 2.5141 -5.9487 1.4020 26 1 3.9817 -5.2312 2.2577 27 1 2.4544 -3.7406 3.6296 28 1 0.9859 -4.4573 2.7746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 10.879164 kcal Electronic energy + Delta-G solvation = -14964.899406 eV Core-core repulsion = 12402.196047 eV Total energy + Delta-G solvation = -2562.703359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26394 -38.32112 -37.72149 -35.52626 -34.42075 -33.03182 -31.26577 -26.86587 -25.34900 -23.50766 -23.00817 -21.73725 -19.62093 -19.16854 -18.06831 -17.26742 -16.95477 -16.34728 -15.87275 -15.64601 -15.12393 -14.78961 -14.52613 -13.60677 -13.18606 -12.83121 -12.55681 -12.45318 -12.26869 -12.08233 -11.96159 -11.30011 -11.08095 -10.91817 -10.59406 -10.37164 -9.64426 -8.85995 -8.49066 -6.12457 0.62806 0.87632 1.47116 1.52837 1.60701 2.30506 2.67535 2.88019 3.08838 3.41908 3.64269 3.81031 4.18262 4.34478 4.44528 4.70457 4.87490 4.95514 5.06977 5.34797 5.38116 5.41696 5.47637 5.64171 6.29471 6.39503 6.67887 6.86944 6.94122 7.08175 7.27328 8.02927 8.50472 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.012709 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.915612 B = 2202.558062 C = 3092.969808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.050 3.950 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.480 4.480 8 H 0.087 0.913 9 C -0.040 4.040 10 C 0.287 3.713 11 O -0.458 6.458 12 N -0.598 5.598 13 C 0.461 3.539 14 N -0.829 5.829 15 N -0.554 5.554 16 C 0.121 3.879 17 C -0.100 4.100 18 C -0.147 4.147 19 C -0.159 4.159 20 H 0.281 0.719 21 H 0.380 0.620 22 H 0.412 0.588 23 H 0.409 0.591 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -3.878 0.918 6.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.167 4.167 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.511 4.511 8 H 0.104 0.896 9 C -0.049 4.049 10 C 0.099 3.901 11 O -0.261 6.261 12 N -0.332 5.332 13 C 0.104 3.896 14 N -0.384 5.384 15 N -0.277 5.277 16 C -0.027 4.027 17 C -0.119 4.119 18 C -0.184 4.184 19 C -0.197 4.197 20 H 0.092 0.908 21 H 0.235 0.765 22 H 0.243 0.757 23 H 0.239 0.761 24 H 0.136 0.864 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.549 -4.353 1.063 5.716 hybrid contribution 0.227 1.319 -0.544 1.445 sum 3.776 -3.033 0.519 4.871 Atomic orbital electron populations 1.69842 1.09335 1.30103 1.34044 1.26468 0.94911 1.03674 0.91645 0.85274 0.79680 0.77069 0.78290 1.17751 1.19628 1.20051 1.19151 0.98833 0.91337 1.41733 0.89551 1.19119 0.95445 0.95611 0.94717 1.19445 0.95261 0.83209 0.92228 1.84815 1.63652 1.34894 1.42788 1.66742 1.30839 0.99485 1.36118 1.18754 0.93506 0.86482 0.90865 1.40969 1.50898 1.05431 1.41150 1.66985 1.12287 1.33152 1.15288 1.20940 0.98002 0.87970 0.95827 1.20593 0.99790 0.99622 0.91909 1.22940 1.00478 0.92866 1.02106 1.22874 0.98958 1.03880 0.93945 0.90835 0.76453 0.75707 0.76099 0.86418 0.89115 0.86341 0.86619 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.47 11.19 21.82 0.24 -43.22 15 2 C 0.05 2.48 4.49 85.22 0.38 2.86 15 3 Si 0.97 37.69 29.60 68.60 2.03 39.72 15 4 H -0.25 -9.36 7.11 99.48 0.71 -8.66 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.28 -10.44 7.11 99.48 0.71 -9.73 15 7 C -0.48 -24.56 8.18 23.36 0.19 -24.37 15 8 H 0.09 4.18 6.89 -2.91 -0.02 4.16 15 9 C -0.04 -2.13 5.40 -20.99 -0.11 -2.25 15 10 C 0.29 15.40 7.33 85.54 0.63 16.03 15 11 O -0.46 -23.14 10.53 -85.65 -0.90 -24.04 15 12 N -0.60 -30.77 10.45 -309.50 -3.23 -34.01 15 13 C 0.46 21.67 8.65 261.50 2.26 23.94 15 14 N -0.83 -29.33 9.04 -59.78 -0.54 -29.88 15 15 N -0.55 -26.20 9.48 -184.48 -1.75 -27.95 15 16 C 0.12 5.89 6.55 43.22 0.28 6.17 15 17 C -0.10 -4.01 5.59 -11.54 -0.06 -4.07 15 18 C -0.15 -4.67 10.04 30.62 0.31 -4.37 15 19 C -0.16 -5.44 10.24 30.62 0.31 -5.13 15 20 H 0.28 14.04 8.30 -92.71 -0.77 13.27 15 21 H 0.38 15.45 9.06 -74.06 -0.67 14.78 15 22 H 0.41 12.27 8.94 -92.70 -0.83 11.45 15 23 H 0.41 12.75 8.94 -92.71 -0.83 11.92 15 24 H 0.12 4.58 6.86 -2.39 -0.02 4.56 15 25 H 0.09 3.08 7.61 -2.39 -0.02 3.06 15 26 H 0.12 2.96 8.14 -2.39 -0.02 2.94 15 27 H 0.12 3.29 8.14 -2.39 -0.02 3.27 15 28 H 0.07 2.64 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -65.44 249.09 -1.05 -66.49 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -1.09 Total: 44.06 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 4.19 Total: 8.81 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -5.28 Total: -135.05 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.90 Total: -24.04 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -65.44 -1.05 -66.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.367 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds