Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.62825 * 299.59732 * 9 7 2 11 11 C 1.52903 * 109.62797 * 179.01270 * 9 7 2 12 12 C 1.50716 * 109.95332 * 189.87245 * 11 9 7 13 13 C 1.38697 * 118.47614 * 196.69855 * 12 11 9 14 14 C 1.38049 * 120.40283 * 180.42208 * 13 12 11 15 15 C 1.38219 * 119.85524 * 0.02562 * 14 13 12 16 16 C 1.38243 * 119.84479 * 359.91104 * 15 14 13 17 17 F 1.35097 * 119.84097 * 180.02562 * 16 15 14 18 18 C 1.37797 * 121.65765 * 16.97643 * 12 11 9 19 19 C 1.50615 * 121.86188 * 359.46274 * 18 12 11 20 20 N 1.46635 * 110.49485 * 17.57607 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.38756 * 310.02134 * 11 9 7 23 23 H 1.09000 * 109.38814 * 69.72942 * 11 9 7 24 24 H 1.07997 * 119.79679 * 0.44224 * 13 12 11 25 25 H 1.08002 * 120.06963 * 179.97438 * 14 13 12 26 26 H 1.08007 * 120.07705 * 179.89137 * 15 14 13 27 27 H 1.08998 * 109.27246 * 257.31650 * 19 18 12 28 28 H 1.08997 * 109.24643 * 137.81920 * 19 18 12 29 29 H 1.00901 * 110.99568 * 184.06534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8780 -0.6864 -0.8922 11 6 4.0252 -2.6340 0.0241 12 6 5.5125 -2.6456 0.2678 13 6 6.2207 -3.8029 -0.0197 14 6 7.5830 -3.8602 0.1966 15 6 8.2462 -2.7584 0.7031 16 6 7.5426 -1.6033 0.9892 17 9 8.1910 -0.5263 1.4838 18 6 6.1717 -1.5444 0.7695 19 6 5.4483 -0.2633 1.0919 20 7 4.0056 -0.5018 1.2009 21 1 -0.4850 0.8401 0.0004 22 1 3.5237 -3.1838 0.8205 23 1 3.8116 -3.1104 -0.9327 24 1 5.7034 -4.6644 -0.4154 25 1 8.1291 -4.7643 -0.0288 26 1 9.3116 -2.7999 0.8753 27 1 5.6340 0.4635 0.3012 28 1 5.8201 0.1310 2.0376 29 1 3.5066 0.3622 1.3512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -18.278366 kcal Electronic energy + Delta-G solvation = -14817.271821 eV Core-core repulsion = 12233.384135 eV Total energy + Delta-G solvation = -2583.887686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.69114 -39.46334 -36.28494 -32.68939 -31.85802 -30.59045 -28.84119 -25.39578 -24.12360 -21.78951 -21.72041 -19.10262 -17.32679 -16.66013 -16.28716 -15.68211 -15.44923 -15.09505 -14.24884 -13.78123 -13.32256 -13.24207 -13.04061 -12.80380 -12.49881 -12.26415 -11.70468 -11.17166 -10.98092 -10.87000 -10.65600 -10.21948 -9.64454 -9.29746 -8.76066 -8.44705 -8.34526 -7.58395 -6.21985 -4.23157 1.37566 1.47091 3.11108 3.18879 3.24311 3.80104 4.22129 4.45677 4.80425 4.92146 4.99065 5.19327 5.34463 5.51295 5.54428 5.81452 5.92218 6.10778 6.13222 6.27737 6.29862 6.38015 6.54911 6.59449 6.88008 7.01816 7.16512 7.39582 8.00312 8.15005 8.42849 8.82605 9.37679 10.90767 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.009429 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.244830 B = 2968.893714 C = 3534.625105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.865 3.135 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.507 4.507 8 H 0.083 0.917 9 C 0.176 3.824 10 H 0.005 0.995 11 C -0.063 4.063 12 C -0.028 4.028 13 C -0.136 4.136 14 C -0.099 4.099 15 C -0.169 4.169 16 C 0.094 3.906 17 F -0.144 7.144 18 C -0.103 4.103 19 C 0.086 3.914 20 N -0.677 5.677 21 H 0.267 0.733 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.780 -4.219 0.252 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.128 4.128 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.546 4.546 8 H 0.101 0.899 9 C 0.069 3.931 10 H 0.023 0.977 11 C -0.100 4.100 12 C -0.029 4.029 13 C -0.154 4.154 14 C -0.117 4.117 15 C -0.187 4.187 16 C 0.074 3.926 17 F -0.122 7.122 18 C -0.104 4.104 19 C -0.044 4.044 20 N -0.315 5.315 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.681 -4.620 0.637 14.454 hybrid contribution 0.647 1.909 -0.454 2.066 sum 14.328 -2.712 0.183 14.583 Atomic orbital electron populations 1.69862 1.06044 1.27126 1.49702 1.25003 0.94796 0.98779 0.94224 0.87147 0.80388 0.84506 0.78517 1.19696 1.19381 1.21320 1.21019 0.87917 0.94979 1.50639 0.89882 1.19667 0.95959 0.90464 0.87000 0.97745 1.20602 0.87957 0.99637 1.01783 1.19944 0.97500 0.91481 0.93933 1.21226 0.94104 0.98104 1.01949 1.20852 0.94472 0.97639 0.98738 1.20908 1.00304 0.92874 1.04658 1.17660 0.90120 0.84318 1.00484 1.91444 1.81412 1.53998 1.85368 1.19703 0.91422 0.97583 1.01691 1.20700 0.91407 0.92321 0.99965 1.61460 1.00079 1.27244 1.42701 0.92320 0.89523 0.90725 0.85488 0.85495 0.85324 0.94625 0.90438 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.96 55.43 0.77 -25.64 15 2 C 0.08 2.12 5.45 -17.82 -0.10 2.02 15 3 Si 0.87 20.89 24.72 -169.99 -4.20 16.69 15 4 H -0.27 -6.28 6.92 56.52 0.39 -5.89 15 5 H -0.27 -6.34 6.55 56.52 0.37 -5.97 15 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.51 -13.89 9.33 -34.44 -0.32 -14.21 15 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 15 9 C 0.18 4.16 1.89 -68.78 -0.13 4.03 15 10 H 0.01 0.12 7.14 -51.93 -0.37 -0.25 15 11 C -0.06 -1.25 5.20 -27.93 -0.15 -1.39 15 12 C -0.03 -0.51 5.77 -104.61 -0.60 -1.11 15 13 C -0.14 -1.97 9.65 -39.48 -0.38 -2.35 15 14 C -0.10 -1.26 10.05 -39.66 -0.40 -1.66 15 15 C -0.17 -2.31 10.02 -39.59 -0.40 -2.71 15 16 C 0.09 1.54 7.23 -39.31 -0.28 1.26 15 17 F -0.14 -2.35 16.54 2.25 0.04 -2.32 15 18 C -0.10 -1.91 5.80 -104.56 -0.61 -2.51 15 19 C 0.09 1.71 6.01 -5.16 -0.03 1.68 15 20 N -0.68 -15.48 6.40 -109.34 -0.70 -16.18 15 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.09 1.76 8.11 -51.93 -0.42 1.33 15 23 H 0.07 1.37 8.14 -51.93 -0.42 0.94 15 24 H 0.13 1.55 8.06 -52.49 -0.42 1.12 15 25 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 26 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 28 H 0.08 1.43 7.90 -51.93 -0.41 1.02 15 29 H 0.33 7.80 4.10 -39.29 -0.16 7.64 15 LS Contribution 242.60 15.07 3.66 3.66 Total: -1.00 -29.24 242.60 -6.90 -36.15 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.07 Total: 4.60 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.39 Total: -16.95 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.07 Total: -41.82 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.20 Total: 16.69 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.24 -6.90 -36.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds