Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.62825 * 299.59732 * 9 7 2 11 11 C 1.52903 * 109.62797 * 179.01270 * 9 7 2 12 12 C 1.50716 * 109.95332 * 189.87245 * 11 9 7 13 13 C 1.38697 * 118.47614 * 196.69855 * 12 11 9 14 14 C 1.38049 * 120.40283 * 180.42208 * 13 12 11 15 15 C 1.38219 * 119.85524 * 0.02562 * 14 13 12 16 16 C 1.38243 * 119.84479 * 359.91104 * 15 14 13 17 17 F 1.35097 * 119.84097 * 180.02562 * 16 15 14 18 18 C 1.37797 * 121.65765 * 16.97643 * 12 11 9 19 19 C 1.50615 * 121.86188 * 359.46274 * 18 12 11 20 20 N 1.46635 * 110.49485 * 17.57607 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.38756 * 310.02134 * 11 9 7 23 23 H 1.09000 * 109.38814 * 69.72942 * 11 9 7 24 24 H 1.07997 * 119.79679 * 0.44224 * 13 12 11 25 25 H 1.08002 * 120.06963 * 179.97438 * 14 13 12 26 26 H 1.08007 * 120.07705 * 179.89137 * 15 14 13 27 27 H 1.08998 * 109.27246 * 257.31650 * 19 18 12 28 28 H 1.08997 * 109.24643 * 137.81920 * 19 18 12 29 29 H 1.00901 * 110.99568 * 184.06534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8780 -0.6864 -0.8922 11 6 4.0252 -2.6340 0.0241 12 6 5.5125 -2.6456 0.2678 13 6 6.2207 -3.8029 -0.0197 14 6 7.5830 -3.8602 0.1966 15 6 8.2462 -2.7584 0.7031 16 6 7.5426 -1.6033 0.9892 17 9 8.1910 -0.5263 1.4838 18 6 6.1717 -1.5444 0.7695 19 6 5.4483 -0.2633 1.0919 20 7 4.0056 -0.5018 1.2009 21 1 -0.4850 0.8401 0.0004 22 1 3.5237 -3.1838 0.8205 23 1 3.8116 -3.1104 -0.9327 24 1 5.7034 -4.6644 -0.4154 25 1 8.1291 -4.7643 -0.0288 26 1 9.3116 -2.7999 0.8753 27 1 5.6340 0.4635 0.3012 28 1 5.8201 0.1310 2.0376 29 1 3.5066 0.3622 1.3512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -37.806337 kcal Electronic energy + Delta-G solvation = -14818.118617 eV Core-core repulsion = 12233.384135 eV Total energy + Delta-G solvation = -2584.734482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.91048 -40.80582 -37.83357 -34.68303 -33.32294 -32.07957 -30.28918 -27.20926 -25.58873 -23.36137 -23.03413 -20.63904 -19.11687 -18.32394 -17.67897 -16.97198 -16.74588 -16.60729 -15.84311 -15.42666 -15.00085 -14.94134 -14.43091 -14.23870 -14.01449 -13.78999 -13.05830 -12.82700 -12.58037 -12.36217 -12.21094 -11.98781 -11.58366 -11.18009 -10.89473 -9.75235 -9.56514 -9.30244 -8.39531 -6.45523 0.20325 0.28840 1.17405 1.22896 1.30028 2.17412 2.63053 2.85453 3.26727 3.42324 3.69418 3.80448 4.05221 4.21312 4.33932 4.35571 4.50699 4.54183 4.65583 4.83439 4.97144 5.11330 5.20034 5.27552 5.37285 5.47337 5.60991 5.97815 6.11999 6.25901 6.38712 6.64838 7.19443 8.76542 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.009429 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.244830 B = 2968.893714 C = 3534.625105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 0.926 3.074 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.050 0.950 9 C 0.179 3.821 10 H -0.007 1.007 11 C -0.056 4.056 12 C -0.053 4.053 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.156 4.156 16 C 0.080 3.920 17 F -0.147 7.147 18 C -0.132 4.132 19 C 0.085 3.915 20 N -0.685 5.685 21 H 0.270 0.730 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.151 0.849 25 H 0.173 0.827 26 H 0.162 0.838 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.910 -5.070 0.192 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.068 0.932 9 C 0.071 3.929 10 H 0.011 0.989 11 C -0.093 4.093 12 C -0.053 4.053 13 C -0.149 4.149 14 C -0.100 4.100 15 C -0.174 4.174 16 C 0.061 3.939 17 F -0.126 7.126 18 C -0.133 4.133 19 C -0.044 4.044 20 N -0.322 5.322 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.169 0.831 25 H 0.190 0.810 26 H 0.180 0.820 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.830 -5.484 0.584 17.711 hybrid contribution -0.284 2.055 -0.438 2.120 sum 16.547 -3.429 0.146 16.899 Atomic orbital electron populations 1.69997 1.07741 1.28237 1.51450 1.25772 0.95508 1.02438 0.93913 0.86152 0.79176 0.80080 0.79407 1.18005 1.18705 1.20964 1.21266 0.90201 0.93824 1.50103 0.93167 1.19539 0.93486 0.93013 0.86835 0.98910 1.20423 0.90039 0.96866 1.02016 1.19814 0.96143 0.93166 0.96198 1.21502 0.95138 0.97358 1.00880 1.21355 0.93634 0.98752 0.96231 1.21360 1.01862 0.91647 1.02569 1.17820 0.89510 0.85331 1.01289 1.91433 1.81247 1.54416 1.85518 1.19687 0.92625 0.97148 1.03825 1.20752 0.89433 0.93744 1.00480 1.61351 1.02002 1.26879 1.42006 0.92104 0.90764 0.89741 0.83134 0.80969 0.82041 0.95096 0.89348 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.96 21.45 0.30 -57.00 15 2 C 0.02 1.34 5.45 84.66 0.46 1.80 15 3 Si 0.93 43.82 24.72 68.60 1.70 45.52 15 4 H -0.25 -11.32 6.92 99.48 0.69 -10.63 15 5 H -0.26 -12.01 6.55 99.48 0.65 -11.36 15 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 7 C -0.52 -29.28 9.33 25.60 0.24 -29.05 15 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 15 9 C 0.18 8.58 1.89 44.09 0.08 8.66 15 10 H -0.01 -0.33 7.14 -2.39 -0.02 -0.34 15 11 C -0.06 -2.24 5.20 29.82 0.16 -2.09 15 12 C -0.05 -1.81 5.77 -19.85 -0.11 -1.93 15 13 C -0.13 -3.32 9.65 22.33 0.22 -3.10 15 14 C -0.08 -1.64 10.05 22.22 0.22 -1.42 15 15 C -0.16 -3.53 10.02 22.27 0.22 -3.31 15 16 C 0.08 2.42 7.23 22.44 0.16 2.58 15 17 F -0.15 -4.51 16.54 44.97 0.74 -3.77 15 18 C -0.13 -4.70 5.80 -19.82 -0.11 -4.81 15 19 C 0.09 3.34 6.01 85.58 0.51 3.86 15 20 N -0.69 -31.45 6.40 -499.85 -3.20 -34.65 15 21 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 22 H 0.07 3.08 8.11 -2.39 -0.02 3.06 15 23 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 24 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 25 H 0.17 1.97 8.06 -2.91 -0.02 1.95 15 26 H 0.16 2.61 8.06 -2.91 -0.02 2.59 15 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 28 H 0.09 3.19 7.90 -2.39 -0.02 3.17 15 29 H 0.32 15.19 4.10 -89.69 -0.37 14.82 15 Total: -1.00 -65.18 242.60 2.31 -62.87 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.72 Total: 15.85 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 2.05 Total: -28.80 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -2.90 Total: -91.66 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.74 Total: -3.77 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.70 Total: 45.52 kcal Total: -65.18 2.31 -62.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.063 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds