Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47582 * 239.99966 * 3 2 1 5 5 H 1.48501 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47152 * 119.99860 * 3 2 1 7 7 C 1.37875 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99724 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.62766 * 60.39556 * 9 7 2 11 11 C 1.52903 * 109.63141 * 180.97969 * 9 7 2 12 12 C 1.50709 * 110.02441 * 169.90539 * 11 9 7 13 13 C 1.38695 * 118.48347 * 162.90394 * 12 11 9 14 14 C 1.38038 * 120.40398 * 179.79847 * 13 12 11 15 15 C 1.38233 * 119.85760 * 0.30786 * 14 13 12 16 16 C 1.38230 * 119.83746 * 0.09199 * 15 14 13 17 17 F 1.35104 * 119.83785 * 179.97438 * 16 15 14 18 18 C 1.37796 * 121.65259 * 343.46193 * 12 11 9 19 19 C 1.50614 * 121.86367 * 0.07223 * 18 12 11 20 20 N 1.46629 * 110.49593 * 342.64397 * 19 18 12 21 21 H 0.97000 * 120.00455 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.39359 * 290.28267 * 11 9 7 23 23 H 1.09003 * 109.38338 * 50.08099 * 11 9 7 24 24 H 1.08002 * 119.80040 * 0.08078 * 13 12 11 25 25 H 1.07998 * 120.07419 * 180.33079 * 14 13 12 26 26 H 1.08004 * 120.07805 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.27065 * 102.90634 * 19 18 12 28 28 H 1.09004 * 109.27494 * 222.41660 * 19 18 12 29 29 H 1.00903 * 111.00102 * 175.94821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6291 -2.5620 -0.8947 11 6 2.2412 -3.6640 0.0225 12 6 1.5096 -4.9581 0.2698 13 6 2.1552 -6.1497 -0.0249 14 6 1.5237 -7.3582 0.1901 15 6 0.2376 -7.3821 0.6962 16 6 -0.4109 -6.1955 0.9829 17 9 -1.6681 -6.2189 1.4770 18 6 0.2241 -4.9787 0.7658 19 6 -0.5242 -3.7119 1.0878 20 7 0.4032 -2.5816 1.1982 21 1 -0.4851 0.8400 -0.0004 22 1 2.7618 -3.7164 -0.9337 23 1 2.9662 -3.5060 0.8210 24 1 3.1599 -6.1322 -0.4207 25 1 2.0334 -8.2830 -0.0362 26 1 -0.2598 -8.3257 0.8661 27 1 -1.2457 -3.5093 0.2962 28 1 -1.0528 -3.8366 2.0329 29 1 -0.0959 -1.7176 1.3484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639417.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -46.320348 kcal Electronic energy + Delta-G solvation = -14718.552584 eV Core-core repulsion = 12133.448907 eV Total energy + Delta-G solvation = -2585.103677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88552 -40.66094 -37.56022 -34.52869 -33.21035 -31.60838 -30.14146 -27.08694 -25.34035 -23.48263 -22.98454 -20.48592 -18.86082 -17.88776 -17.54480 -16.82510 -16.66008 -16.51372 -15.73397 -15.30382 -15.10794 -14.42287 -14.23386 -13.91899 -13.85843 -13.52213 -12.96888 -12.77980 -12.56829 -12.39239 -12.13812 -11.99364 -11.44865 -11.01370 -10.74932 -9.64149 -9.52497 -8.96932 -8.21269 -6.34842 0.23300 0.32902 1.43940 1.45996 1.53680 2.41042 2.66584 3.04122 3.31864 3.71316 3.83438 3.99293 4.11371 4.29543 4.40071 4.56218 4.62969 4.70269 4.80091 4.92943 5.08099 5.17956 5.26120 5.42797 5.47049 5.66374 5.75312 6.02354 6.05217 6.55077 6.83244 6.98965 7.37458 8.87085 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049925 B = 0.007880 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.706013 B = 3552.614050 C = 4041.026163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.017 3.983 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.208 3.792 10 H -0.039 1.039 11 C -0.063 4.063 12 C -0.054 4.054 13 C -0.132 4.132 14 C -0.084 4.084 15 C -0.157 4.157 16 C 0.075 3.925 17 F -0.150 7.150 18 C -0.131 4.131 19 C 0.096 3.904 20 N -0.683 5.683 21 H 0.267 0.733 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.152 0.848 25 H 0.174 0.826 26 H 0.162 0.838 27 H 0.012 0.988 28 H 0.074 0.926 29 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -12.624 0.250 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.182 4.182 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.100 3.900 10 H -0.022 1.022 11 C -0.101 4.101 12 C -0.054 4.054 13 C -0.150 4.150 14 C -0.102 4.102 15 C -0.176 4.176 16 C 0.055 3.945 17 F -0.129 7.129 18 C -0.132 4.132 19 C -0.034 4.034 20 N -0.318 5.318 21 H 0.076 0.924 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.170 0.830 25 H 0.192 0.808 26 H 0.179 0.821 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.083 -12.840 0.646 13.221 hybrid contribution -1.072 1.632 -0.513 2.019 sum 2.011 -11.208 0.133 11.388 Atomic orbital electron populations 1.69814 1.07481 1.28129 1.51524 1.25866 0.95750 1.02973 0.93652 0.85443 0.78177 0.78035 0.78951 1.19372 1.21125 1.19481 1.21519 0.93666 0.91053 1.50765 0.91509 1.19032 0.90792 0.93603 0.86557 1.02176 1.20575 0.97657 0.90413 1.01409 1.19889 0.92657 0.96893 0.95996 1.21518 1.01465 0.91071 1.00959 1.21353 0.93345 0.99043 0.96447 1.21351 0.96922 0.96519 1.02789 1.17909 0.80398 0.94616 1.01563 1.91422 1.38419 1.97431 1.85582 1.19846 0.96242 0.93749 1.03405 1.20547 0.93539 0.90459 0.98824 1.61206 1.23640 1.06744 1.40212 0.92412 0.90210 0.90696 0.82983 0.80838 0.82066 0.96991 0.90830 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.13 11.54 21.45 0.25 -52.88 15 2 C 0.02 0.90 5.25 84.65 0.44 1.35 15 3 Si 0.97 42.96 29.54 68.60 2.03 44.98 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 7 C -0.53 -29.15 8.75 25.60 0.22 -28.93 15 8 H 0.07 3.51 7.75 -2.91 -0.02 3.48 15 9 C 0.21 10.86 2.41 44.09 0.11 10.97 15 10 H -0.04 -2.31 8.05 -2.38 -0.02 -2.33 15 11 C -0.06 -2.67 5.20 29.82 0.15 -2.51 15 12 C -0.05 -2.03 5.77 -19.86 -0.11 -2.14 15 13 C -0.13 -3.66 9.65 22.33 0.22 -3.45 15 14 C -0.08 -1.89 10.05 22.22 0.22 -1.66 15 15 C -0.16 -4.03 10.02 22.27 0.22 -3.81 15 16 C 0.07 2.56 7.23 22.44 0.16 2.72 15 17 F -0.15 -5.23 16.54 44.97 0.74 -4.49 15 18 C -0.13 -5.28 5.80 -19.82 -0.11 -5.39 15 19 C 0.10 4.39 6.01 85.58 0.51 4.91 15 20 N -0.68 -35.13 6.59 -499.86 -3.29 -38.42 15 21 H 0.27 14.51 8.31 -92.71 -0.77 13.73 15 22 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 23 H 0.07 3.15 8.11 -2.39 -0.02 3.13 15 24 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.17 2.29 8.06 -2.91 -0.02 2.27 15 26 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 28 H 0.07 3.17 7.90 -2.39 -0.02 3.15 15 29 H 0.35 19.60 6.55 -89.69 -0.59 19.01 15 Total: -1.00 -62.25 248.79 2.34 -59.91 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.57 Total: 18.84 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 2.04 Total: -27.95 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -3.05 Total: -91.30 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.74 Total: -4.49 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -62.25 2.34 -59.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639417.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.593 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds