Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.62825 * 299.59732 * 9 7 2 11 11 C 1.52901 * 109.63165 * 179.00872 * 9 7 2 12 12 C 1.50713 * 109.96378 * 189.89379 * 11 9 7 13 13 C 1.38647 * 118.46214 * 196.72623 * 12 11 9 14 14 C 1.38260 * 120.33062 * 180.39833 * 13 12 11 15 15 F 1.35099 * 120.11469 * 179.97438 * 14 13 12 16 16 C 1.38490 * 119.76825 * 359.96962 * 14 13 12 17 17 C 1.37964 * 119.84616 * 359.91453 * 16 14 13 18 18 C 1.37849 * 121.66148 * 16.92332 * 12 11 9 19 19 C 1.50629 * 121.83716 * 359.52241 * 18 12 11 20 20 N 1.46630 * 110.49932 * 17.55230 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.38791 * 310.02870 * 11 9 7 23 23 H 1.09006 * 109.38868 * 69.72589 * 11 9 7 24 24 H 1.08003 * 119.83660 * 0.38302 * 13 12 11 25 25 H 1.08001 * 120.07161 * 179.89600 * 16 14 13 26 26 H 1.07997 * 119.79766 * 180.02562 * 17 16 14 27 27 H 1.09005 * 109.26513 * 257.29695 * 19 18 12 28 28 H 1.08995 * 109.24913 * 137.80570 * 19 18 12 29 29 H 1.00904 * 110.99760 * 184.04379 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8780 -0.6864 -0.8922 11 6 4.0253 -2.6340 0.0242 12 6 5.5124 -2.6457 0.2684 13 6 6.2202 -3.8026 -0.0195 14 6 7.5845 -3.8587 0.1975 15 9 8.2698 -4.9884 -0.0840 16 6 8.2462 -2.7527 0.7045 17 6 7.5411 -1.6013 0.9883 18 6 6.1721 -1.5439 0.7696 19 6 5.4481 -0.2629 1.0918 20 7 4.0056 -0.5018 1.2009 21 1 -0.4850 0.8401 0.0004 22 1 3.5237 -3.1838 0.8206 23 1 3.8116 -3.1105 -0.9326 24 1 5.7032 -4.6645 -0.4150 25 1 9.3115 -2.7917 0.8775 26 1 8.0579 -0.7391 1.3832 27 1 5.6336 0.4638 0.3008 28 1 5.8200 0.1319 2.0373 29 1 3.5064 0.3620 1.3514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260662947.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -19.360497 kcal Electronic energy + Delta-G solvation = -14642.251960 eV Core-core repulsion = 12058.317349 eV Total energy + Delta-G solvation = -2583.934610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.72082 -39.56568 -36.14368 -32.67644 -32.25011 -30.21008 -29.00424 -25.40334 -23.88114 -22.17082 -21.66934 -19.11932 -17.20712 -16.60671 -16.50511 -15.59338 -15.41243 -15.02150 -14.14686 -13.90360 -13.47834 -13.43633 -13.04823 -12.82062 -12.53752 -12.25934 -11.59204 -11.21464 -11.01717 -10.86734 -10.53789 -10.24824 -9.67389 -9.31144 -8.77106 -8.66883 -8.19635 -7.58678 -6.22609 -4.23858 1.36889 1.45954 3.08925 3.16373 3.22827 3.78480 4.20839 4.43450 4.80675 4.93256 5.02661 5.11350 5.38899 5.42008 5.58608 5.83731 5.91457 6.02202 6.16811 6.25368 6.29863 6.31470 6.54292 6.56325 6.93130 7.01215 7.15741 7.39002 8.00005 8.13940 8.42426 8.82213 9.36728 10.90223 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053016 B = 0.008028 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.015093 B = 3486.783509 C = 3912.740138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.507 4.507 8 H 0.083 0.917 9 C 0.178 3.822 10 H 0.005 0.995 11 C -0.063 4.063 12 C -0.026 4.026 13 C -0.159 4.159 14 C 0.087 3.913 15 F -0.147 7.147 16 C -0.166 4.166 17 C -0.092 4.092 18 C -0.080 4.080 19 C 0.084 3.916 20 N -0.679 5.679 21 H 0.267 0.733 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -2.257 0.940 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.214 1.214 7 C -0.546 4.546 8 H 0.101 0.899 9 C 0.071 3.929 10 H 0.023 0.977 11 C -0.101 4.101 12 C -0.027 4.027 13 C -0.178 4.178 14 C 0.068 3.932 15 F -0.126 7.126 16 C -0.185 4.185 17 C -0.111 4.111 18 C -0.081 4.081 19 C -0.045 4.045 20 N -0.317 5.317 21 H 0.077 0.923 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.695 -2.751 1.293 14.028 hybrid contribution 0.627 1.462 -0.614 1.706 sum 14.322 -1.288 0.679 14.396 Atomic orbital electron populations 1.69865 1.06071 1.27122 1.49695 1.25014 0.94803 0.98810 0.94251 0.87118 0.80366 0.84449 0.78428 1.19724 1.19372 1.21395 1.21026 0.87963 0.94985 1.50623 0.89932 1.19642 0.95915 0.90345 0.87002 0.97727 1.20608 0.87958 0.99704 1.01782 1.19900 0.97369 0.91324 0.94068 1.21139 0.92229 0.99830 1.04576 1.17613 0.90342 0.83017 1.02201 1.91456 1.79835 1.49592 1.91702 1.20895 1.00417 0.93025 1.04179 1.20867 0.93409 0.97340 0.99446 1.19761 0.93214 0.95990 0.99086 1.20811 0.91305 0.92688 0.99705 1.61455 1.00338 1.27212 1.42690 0.92326 0.89559 0.90854 0.84963 0.85305 0.85436 0.94713 0.90491 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 15 2 C 0.07 2.07 5.45 -17.82 -0.10 1.98 15 3 Si 0.87 20.44 24.72 -169.99 -4.20 16.24 15 4 H -0.27 -6.09 6.92 56.52 0.39 -5.70 15 5 H -0.27 -6.13 6.55 56.52 0.37 -5.76 15 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 7 C -0.51 -13.78 9.33 -34.44 -0.32 -14.10 15 8 H 0.08 2.40 7.99 -52.49 -0.42 1.98 15 9 C 0.18 4.12 1.89 -68.78 -0.13 3.99 15 10 H 0.01 0.13 7.14 -51.93 -0.37 -0.24 15 11 C -0.06 -1.26 5.20 -27.93 -0.15 -1.40 15 12 C -0.03 -0.47 5.77 -104.61 -0.60 -1.07 15 13 C -0.16 -2.52 9.64 -39.42 -0.38 -2.90 15 14 C 0.09 1.32 7.30 -39.48 -0.29 1.03 15 15 F -0.15 -2.18 17.27 2.25 0.04 -2.14 15 16 C -0.17 -2.27 10.03 -39.59 -0.40 -2.66 15 17 C -0.09 -1.30 9.64 -39.49 -0.38 -1.68 15 18 C -0.08 -1.37 5.79 -104.61 -0.61 -1.98 15 19 C 0.08 1.52 6.34 -5.16 -0.03 1.49 15 20 N -0.68 -14.87 6.40 -109.34 -0.70 -15.57 15 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.09 1.76 8.11 -51.93 -0.42 1.34 15 23 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.13 1.88 8.06 -52.48 -0.42 1.45 15 25 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 28 H 0.08 1.20 8.13 -51.93 -0.42 0.78 15 29 H 0.33 7.47 4.10 -39.29 -0.16 7.31 15 LS Contribution 243.54 15.07 3.67 3.67 Total: -1.00 -28.78 243.54 -6.89 -35.66 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.09 Total: 4.93 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.38 Total: -17.32 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.07 Total: -41.05 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.20 Total: 16.24 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.78 -6.89 -35.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260662947.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.303 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds