Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.62825 * 299.59732 * 9 7 2 11 11 C 1.52901 * 109.63165 * 179.00872 * 9 7 2 12 12 C 1.50713 * 109.96378 * 189.89379 * 11 9 7 13 13 C 1.38647 * 118.46214 * 196.72623 * 12 11 9 14 14 C 1.38260 * 120.33062 * 180.39833 * 13 12 11 15 15 F 1.35099 * 120.11469 * 179.97438 * 14 13 12 16 16 C 1.38490 * 119.76825 * 359.96962 * 14 13 12 17 17 C 1.37964 * 119.84616 * 359.91453 * 16 14 13 18 18 C 1.37849 * 121.66148 * 16.92332 * 12 11 9 19 19 C 1.50629 * 121.83716 * 359.52241 * 18 12 11 20 20 N 1.46630 * 110.49932 * 17.55230 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.38791 * 310.02870 * 11 9 7 23 23 H 1.09006 * 109.38868 * 69.72589 * 11 9 7 24 24 H 1.08003 * 119.83660 * 0.38302 * 13 12 11 25 25 H 1.08001 * 120.07161 * 179.89600 * 16 14 13 26 26 H 1.07997 * 119.79766 * 180.02562 * 17 16 14 27 27 H 1.09005 * 109.26513 * 257.29695 * 19 18 12 28 28 H 1.08995 * 109.24913 * 137.80570 * 19 18 12 29 29 H 1.00904 * 110.99760 * 184.04379 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8780 -0.6864 -0.8922 11 6 4.0253 -2.6340 0.0242 12 6 5.5124 -2.6457 0.2684 13 6 6.2202 -3.8026 -0.0195 14 6 7.5845 -3.8587 0.1975 15 9 8.2698 -4.9884 -0.0840 16 6 8.2462 -2.7527 0.7045 17 6 7.5411 -1.6013 0.9883 18 6 6.1721 -1.5439 0.7696 19 6 5.4481 -0.2629 1.0918 20 7 4.0056 -0.5018 1.2009 21 1 -0.4850 0.8401 0.0004 22 1 3.5237 -3.1838 0.8206 23 1 3.8116 -3.1105 -0.9326 24 1 5.7032 -4.6645 -0.4150 25 1 9.3115 -2.7917 0.8775 26 1 8.0579 -0.7391 1.3832 27 1 5.6336 0.4638 0.3008 28 1 5.8200 0.1319 2.0373 29 1 3.5064 0.3620 1.3514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260662947.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -38.308223 kcal Electronic energy + Delta-G solvation = -14643.073595 eV Core-core repulsion = 12058.317349 eV Total energy + Delta-G solvation = -2584.756245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.87053 -40.88773 -37.68586 -34.59094 -33.69666 -31.66687 -30.46883 -27.20229 -25.28664 -23.40918 -23.26253 -20.60902 -19.04634 -18.04452 -17.96831 -16.94445 -16.63409 -16.48988 -15.65698 -15.44328 -15.01760 -14.88587 -14.66004 -14.15789 -14.06900 -13.75749 -12.98726 -12.80755 -12.68882 -12.35550 -11.97106 -11.94215 -11.57838 -11.19114 -10.86197 -9.86911 -9.51943 -9.18169 -8.36118 -6.43363 0.17616 0.28842 1.21375 1.28196 1.36257 2.22137 2.58993 2.90384 3.26634 3.52244 3.76152 3.81280 3.98468 4.21855 4.32925 4.43857 4.55774 4.57765 4.74004 4.83150 5.00560 5.04536 5.15854 5.24444 5.30107 5.48218 5.64815 5.95167 6.17003 6.31756 6.46630 6.68789 7.21719 8.80189 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053016 B = 0.008028 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.015093 B = 3486.783509 C = 3912.740138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.018 3.982 3 Si 0.934 3.066 4 H -0.249 1.249 5 H -0.255 1.255 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.042 0.958 9 C 0.184 3.816 10 H -0.003 1.003 11 C -0.057 4.057 12 C -0.050 4.050 13 C -0.164 4.164 14 C 0.082 3.918 15 F -0.146 7.146 16 C -0.153 4.153 17 C -0.080 4.080 18 C -0.098 4.098 19 C 0.081 3.919 20 N -0.690 5.690 21 H 0.269 0.731 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.139 0.861 25 H 0.164 0.836 26 H 0.165 0.835 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.279 -1.143 1.574 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.174 1.174 5 H -0.180 1.180 6 H -0.215 1.215 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.076 3.924 10 H 0.014 0.986 11 C -0.095 4.095 12 C -0.051 4.051 13 C -0.182 4.182 14 C 0.063 3.937 15 F -0.125 7.125 16 C -0.171 4.171 17 C -0.098 4.098 18 C -0.098 4.098 19 C -0.048 4.048 20 N -0.328 5.328 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.181 0.819 26 H 0.183 0.817 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.206 -1.658 1.935 17.394 hybrid contribution -0.429 0.999 -0.813 1.358 sum 16.777 -0.659 1.122 16.828 Atomic orbital electron populations 1.70024 1.08045 1.28309 1.51494 1.25883 0.95584 1.02918 0.93739 0.86026 0.79233 0.79160 0.79643 1.17438 1.17959 1.21491 1.21276 0.90487 0.93663 1.50380 0.93946 1.19439 0.93196 0.92471 0.87293 0.98570 1.20403 0.90169 0.97464 1.01439 1.19686 0.95839 0.92966 0.96569 1.21158 0.92993 0.99484 1.04610 1.17751 0.90028 0.83650 1.02319 1.91464 1.79621 1.49682 1.91706 1.21294 1.02036 0.91847 1.01936 1.21176 0.91933 0.98651 0.98060 1.19878 0.94743 0.95262 0.99954 1.21000 0.88562 0.93636 1.01582 1.61293 1.02929 1.26960 1.41573 0.92172 0.91206 0.90751 0.84355 0.81884 0.81743 0.94117 0.87460 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.96 21.45 0.30 -57.11 15 2 C 0.02 1.01 5.45 84.66 0.46 1.47 15 3 Si 0.93 42.17 24.72 68.60 1.70 43.87 15 4 H -0.25 -10.34 6.92 99.48 0.69 -9.65 15 5 H -0.26 -10.85 6.55 99.48 0.65 -10.20 15 6 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 7 C -0.52 -29.40 9.33 25.60 0.24 -29.16 15 8 H 0.04 2.64 7.99 -2.91 -0.02 2.62 15 9 C 0.18 8.59 1.89 44.09 0.08 8.67 15 10 H 0.00 -0.15 7.14 -2.39 -0.02 -0.17 15 11 C -0.06 -2.33 5.20 29.82 0.16 -2.18 15 12 C -0.05 -1.74 5.77 -19.85 -0.11 -1.85 15 13 C -0.16 -4.95 9.64 22.37 0.22 -4.74 15 14 C 0.08 2.21 7.30 22.34 0.16 2.37 15 15 F -0.15 -3.91 17.27 44.97 0.78 -3.14 15 16 C -0.15 -3.43 10.03 22.26 0.22 -3.21 15 17 C -0.08 -1.87 9.64 22.33 0.22 -1.65 15 18 C -0.10 -3.06 5.79 -19.85 -0.12 -3.18 15 19 C 0.08 2.66 6.34 85.59 0.54 3.21 15 20 N -0.69 -29.35 6.40 -499.84 -3.20 -32.55 15 21 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 22 H 0.07 2.99 8.11 -2.39 -0.02 2.97 15 23 H 0.07 2.89 8.14 -2.38 -0.02 2.87 15 24 H 0.14 3.85 8.06 -2.91 -0.02 3.83 15 25 H 0.16 2.58 8.06 -2.91 -0.02 2.56 15 26 H 0.17 2.63 8.06 -2.91 -0.02 2.60 15 27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 15 28 H 0.11 2.87 8.13 -2.39 -0.02 2.85 15 29 H 0.32 14.09 4.10 -89.69 -0.37 13.72 15 Total: -1.00 -63.95 243.54 2.36 -61.59 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.72 Total: 17.59 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 2.07 Total: -30.24 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.90 Total: -89.66 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.70 Total: 43.87 kcal Total: -63.95 2.36 -61.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260662947.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.282 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds