Wall clock time and date at job start Mon Mar 30 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48496 * 109.47061 * 95.07804 * 3 2 1 5 5 H 1.48498 * 109.47061 * 215.08006 * 3 2 1 6 6 H 1.48500 * 109.46934 * 335.08048 * 3 2 1 7 7 C 1.37873 * 120.00298 * 180.28059 * 2 1 3 8 8 H 1.08001 * 119.99970 * 5.80002 * 7 2 1 9 9 C 1.50704 * 120.00179 * 185.80534 * 7 2 1 10 10 C 1.50697 * 112.95678 * 245.97662 * 9 7 2 11 11 C 1.38271 * 119.98251 * 271.24974 * 10 9 7 12 12 C 1.38229 * 120.04538 * 179.76678 * 11 10 9 13 13 C 1.38218 * 120.02590 * 0.51633 * 12 11 10 14 14 C 1.38436 * 119.97677 * 359.74094 * 13 12 11 15 15 F 1.35096 * 120.02821 * 179.97438 * 14 13 12 16 16 C 1.38168 * 119.98823 * 91.53200 * 10 9 7 17 17 C 1.53937 * 113.75869 * 114.32424 * 9 7 2 18 18 C 1.53930 * 86.34280 * 269.40751 * 17 9 7 19 19 N 1.47956 * 86.17979 * 336.27895 * 18 17 9 20 20 H 0.96993 * 120.00556 * 359.97438 * 1 2 3 21 21 H 1.07993 * 119.97668 * 0.02592 * 11 10 9 22 22 H 1.08000 * 119.98386 * 180.25627 * 12 11 10 23 23 H 1.08005 * 120.01222 * 179.76790 * 13 12 11 24 24 H 1.08003 * 120.01320 * 359.95053 * 16 10 9 25 25 H 1.09003 * 113.73489 * 23.76607 * 17 9 7 26 26 H 1.09000 * 113.73109 * 155.04651 * 17 9 7 27 27 H 1.08995 * 113.76237 * 90.60135 * 18 17 9 28 28 H 1.09000 * 113.75732 * 221.96635 * 18 17 9 29 29 H 1.00894 * 111.00630 * 271.79708 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6038 1.9845 1.3945 5 1 3.4888 1.4736 -0.8046 6 1 1.3968 2.6813 -0.5899 7 6 2.0045 -1.1940 -0.0058 8 1 1.4687 -2.1264 -0.1049 9 6 3.5058 -1.1979 0.1261 10 6 4.2036 -1.6932 -1.1143 11 6 4.4602 -3.0429 -1.2705 12 6 5.0958 -3.4992 -2.4100 13 6 5.4852 -2.6054 -3.3897 14 6 5.2336 -1.2533 -3.2319 15 9 5.6142 -0.3787 -4.1886 16 6 4.5919 -0.7979 -2.0923 17 6 4.0124 -1.8502 1.4252 18 6 3.9365 -0.4432 2.0449 19 7 4.0605 0.0652 0.6610 20 1 -0.4850 0.8399 0.0004 21 1 4.1600 -3.7415 -0.5036 22 1 5.2920 -4.5541 -2.5328 23 1 5.9852 -2.9618 -4.2782 24 1 4.3947 0.2567 -1.9684 25 1 3.3105 -2.5605 1.8622 26 1 5.0264 -2.2433 1.3521 27 1 2.9768 -0.2196 2.5106 28 1 4.7868 -0.1970 2.6809 29 1 5.0292 0.1734 0.4008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668108.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:39 Heat of formation + Delta-G solvation = 22.073375 kcal Electronic energy + Delta-G solvation = -15029.341754 eV Core-core repulsion = 12447.203851 eV Total energy + Delta-G solvation = -2582.137903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.47729 -39.79192 -37.55585 -32.28973 -30.90649 -30.06903 -26.83822 -26.49800 -23.72230 -22.02954 -21.50055 -18.95573 -17.26316 -16.67835 -15.78478 -15.70634 -15.17750 -14.91297 -14.82494 -13.61174 -13.36137 -13.13151 -12.54866 -12.32623 -12.15283 -11.83704 -11.52499 -11.17594 -10.89556 -10.44927 -10.13835 -10.02484 -9.96309 -9.49801 -8.49433 -8.39961 -8.12126 -7.27400 -6.07846 -4.19977 1.65517 1.73771 3.68062 3.71327 3.95615 4.10590 4.64655 4.70316 4.87837 5.08618 5.18474 5.36953 5.46357 5.63797 5.70497 5.80751 5.94410 6.09552 6.36533 6.37215 6.49246 6.56398 6.68517 6.70295 6.74321 6.85191 7.21843 7.39025 7.50760 8.04737 8.40047 8.84097 9.52891 10.98645 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.012126 C = 0.010711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.004162 B = 2308.453287 C = 2613.577417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 1.002 2.998 4 H -0.302 1.302 5 H -0.284 1.284 6 H -0.352 1.352 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.225 3.775 10 C -0.018 4.018 11 C -0.127 4.127 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.091 3.909 15 F -0.149 7.149 16 C -0.153 4.153 17 C -0.182 4.182 18 C 0.023 3.977 19 N -0.648 5.648 20 H 0.266 0.734 21 H 0.124 0.876 22 H 0.124 0.876 23 H 0.124 0.876 24 H 0.139 0.861 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.146 -4.180 -1.121 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.133 4.133 3 Si 0.846 3.154 4 H -0.231 1.231 5 H -0.213 1.213 6 H -0.288 1.288 7 C -0.543 4.543 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.020 4.020 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.197 4.197 14 C 0.072 3.928 15 F -0.128 7.128 16 C -0.172 4.172 17 C -0.221 4.221 18 C -0.106 4.106 19 N -0.279 5.279 20 H 0.075 0.925 21 H 0.142 0.858 22 H 0.142 0.858 23 H 0.142 0.858 24 H 0.157 0.843 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.383 -3.472 -1.232 11.018 hybrid contribution 1.067 0.203 -0.150 1.096 sum 11.451 -3.270 -1.382 11.988 Atomic orbital electron populations 1.69959 1.07157 1.27983 1.47553 1.25241 0.94914 1.01163 0.92012 0.84602 0.75258 0.77922 0.77618 1.23079 1.21286 1.28782 1.20242 0.85204 0.95301 1.53565 0.90029 1.19492 0.95719 0.84915 0.86412 1.20453 0.91210 0.92906 0.97408 1.20979 0.99957 0.95467 0.98184 1.20872 0.98177 0.98909 0.93398 1.20905 1.05863 0.91594 1.01346 1.17749 1.00437 0.87164 0.87407 1.91442 1.89484 1.69145 1.62687 1.21246 1.00687 1.02197 0.93103 1.24655 0.99769 0.98201 0.99491 1.23376 1.01801 0.93877 0.91584 1.64562 1.20739 1.36613 1.05971 0.92503 0.85798 0.85821 0.85780 0.84304 0.91156 0.92024 0.88319 0.92362 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.35 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 1.00 25.58 24.43 -169.99 -4.15 21.43 15 4 H -0.30 -7.61 7.05 56.52 0.40 -7.21 15 5 H -0.28 -6.84 4.53 56.52 0.26 -6.58 15 6 H -0.35 -9.47 7.11 56.52 0.40 -9.06 15 7 C -0.51 -13.68 8.97 -34.44 -0.31 -13.99 15 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 15 9 C 0.23 4.90 0.94 -132.85 -0.12 4.78 15 10 C -0.02 -0.37 4.77 -104.64 -0.50 -0.86 15 11 C -0.13 -2.20 9.22 -39.57 -0.36 -2.57 15 12 C -0.10 -1.43 10.04 -39.59 -0.40 -1.83 15 13 C -0.18 -2.78 10.03 -39.52 -0.40 -3.18 15 14 C 0.09 1.66 7.30 -39.42 -0.29 1.37 15 15 F -0.15 -2.68 17.27 2.25 0.04 -2.64 15 16 C -0.15 -3.08 9.16 -39.52 -0.36 -3.44 15 17 C -0.18 -3.35 6.65 -25.80 -0.17 -3.53 15 18 C 0.02 0.43 8.03 -2.77 -0.02 0.40 15 19 N -0.65 -13.48 2.24 -105.95 -0.24 -13.71 15 20 H 0.27 7.69 8.31 -40.82 -0.34 7.36 15 21 H 0.12 1.98 7.68 -52.49 -0.40 1.58 15 22 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 23 H 0.12 1.60 8.06 -52.48 -0.42 1.18 15 24 H 0.14 2.96 6.07 -52.48 -0.32 2.64 15 25 H 0.07 1.32 8.09 -51.93 -0.42 0.90 15 26 H 0.06 0.99 7.98 -51.93 -0.41 0.57 15 27 H 0.10 2.05 8.00 -51.93 -0.42 1.63 15 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 29 H 0.33 6.04 8.27 -39.30 -0.33 5.71 15 LS Contribution 243.87 15.07 3.68 3.68 Total: -1.00 -30.10 243.87 -6.21 -36.31 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.27 Total: 2.19 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.03 Total: -20.89 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.54 Total: -40.06 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.15 Total: 21.43 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.10 -6.21 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668108.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.379 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds