Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48496 * 109.47061 * 95.07804 * 3 2 1 5 5 H 1.48498 * 109.47061 * 215.08006 * 3 2 1 6 6 H 1.48500 * 109.46934 * 335.08048 * 3 2 1 7 7 C 1.37873 * 120.00298 * 180.28059 * 2 1 3 8 8 H 1.08001 * 119.99970 * 5.80002 * 7 2 1 9 9 C 1.50704 * 120.00179 * 185.80534 * 7 2 1 10 10 C 1.50697 * 112.95678 * 245.97662 * 9 7 2 11 11 C 1.38271 * 119.98251 * 271.24974 * 10 9 7 12 12 C 1.38229 * 120.04538 * 179.76678 * 11 10 9 13 13 C 1.38218 * 120.02590 * 0.51633 * 12 11 10 14 14 C 1.38436 * 119.97677 * 359.74094 * 13 12 11 15 15 F 1.35096 * 120.02821 * 179.97438 * 14 13 12 16 16 C 1.38168 * 119.98823 * 91.53200 * 10 9 7 17 17 C 1.53937 * 113.75869 * 114.32424 * 9 7 2 18 18 C 1.53930 * 86.34280 * 269.40751 * 17 9 7 19 19 N 1.47956 * 86.17979 * 336.27895 * 18 17 9 20 20 H 0.96993 * 120.00556 * 359.97438 * 1 2 3 21 21 H 1.07993 * 119.97668 * 0.02592 * 11 10 9 22 22 H 1.08000 * 119.98386 * 180.25627 * 12 11 10 23 23 H 1.08005 * 120.01222 * 179.76790 * 13 12 11 24 24 H 1.08003 * 120.01320 * 359.95053 * 16 10 9 25 25 H 1.09003 * 113.73489 * 23.76607 * 17 9 7 26 26 H 1.09000 * 113.73109 * 155.04651 * 17 9 7 27 27 H 1.08995 * 113.76237 * 90.60135 * 18 17 9 28 28 H 1.09000 * 113.75732 * 221.96635 * 18 17 9 29 29 H 1.00894 * 111.00630 * 271.79708 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6038 1.9845 1.3945 5 1 3.4888 1.4736 -0.8046 6 1 1.3968 2.6813 -0.5899 7 6 2.0045 -1.1940 -0.0058 8 1 1.4687 -2.1264 -0.1049 9 6 3.5058 -1.1979 0.1261 10 6 4.2036 -1.6932 -1.1143 11 6 4.4602 -3.0429 -1.2705 12 6 5.0958 -3.4992 -2.4100 13 6 5.4852 -2.6054 -3.3897 14 6 5.2336 -1.2533 -3.2319 15 9 5.6142 -0.3787 -4.1886 16 6 4.5919 -0.7979 -2.0923 17 6 4.0124 -1.8502 1.4252 18 6 3.9365 -0.4432 2.0449 19 7 4.0605 0.0652 0.6610 20 1 -0.4850 0.8399 0.0004 21 1 4.1600 -3.7415 -0.5036 22 1 5.2920 -4.5541 -2.5328 23 1 5.9852 -2.9618 -4.2782 24 1 4.3947 0.2567 -1.9684 25 1 3.3105 -2.5605 1.8622 26 1 5.0264 -2.2433 1.3521 27 1 2.9768 -0.2196 2.5106 28 1 4.7868 -0.1970 2.6809 29 1 5.0292 0.1734 0.4008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668108.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = 2.771319 kcal Electronic energy + Delta-G solvation = -15030.178754 eV Core-core repulsion = 12447.203851 eV Total energy + Delta-G solvation = -2582.974903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86066 -41.34681 -38.96560 -34.42895 -32.31749 -31.44351 -28.66146 -28.10573 -25.43917 -23.38670 -22.90953 -20.67735 -18.74052 -18.63682 -17.27671 -17.08286 -16.68665 -16.53852 -16.32794 -15.15073 -15.05251 -14.74124 -14.18947 -13.88871 -13.83895 -13.39626 -12.93257 -12.66192 -12.57093 -12.29824 -12.02099 -11.73718 -11.59241 -11.37004 -10.59610 -9.79799 -9.51335 -8.97987 -8.27858 -6.39640 0.29066 0.39050 1.60677 1.63147 1.90742 2.61455 2.72721 3.09337 3.20837 3.39549 3.80562 3.96694 4.05808 4.18721 4.32931 4.44221 4.56856 4.68349 4.91800 4.99920 5.03766 5.13588 5.18783 5.23186 5.31195 5.47643 5.59223 5.75917 6.05453 6.23457 6.45167 6.73478 7.36300 8.82393 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.012126 C = 0.010711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.004162 B = 2308.453287 C = 2613.577417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 1.053 2.947 4 H -0.297 1.297 5 H -0.267 1.267 6 H -0.379 1.379 7 C -0.498 4.498 8 H 0.044 0.956 9 C 0.212 3.788 10 C -0.040 4.040 11 C -0.130 4.130 12 C -0.080 4.080 13 C -0.163 4.163 14 C 0.078 3.922 15 F -0.152 7.152 16 C -0.174 4.174 17 C -0.160 4.160 18 C 0.022 3.978 19 N -0.665 5.665 20 H 0.262 0.738 21 H 0.137 0.863 22 H 0.169 0.831 23 H 0.159 0.841 24 H 0.116 0.884 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.304 -5.869 -1.452 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.179 4.179 3 Si 0.897 3.103 4 H -0.226 1.226 5 H -0.195 1.195 6 H -0.317 1.317 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.121 3.879 10 C -0.041 4.041 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.182 4.182 14 C 0.059 3.941 15 F -0.131 7.131 16 C -0.193 4.193 17 C -0.199 4.199 18 C -0.106 4.106 19 N -0.298 5.298 20 H 0.071 0.929 21 H 0.155 0.845 22 H 0.186 0.814 23 H 0.177 0.823 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.596 -5.184 -1.557 14.634 hybrid contribution 0.161 0.580 -0.097 0.610 sum 13.757 -4.604 -1.654 14.601 Atomic orbital electron populations 1.70082 1.08721 1.28196 1.51322 1.25959 0.95273 1.04097 0.92550 0.83697 0.74356 0.74387 0.77863 1.22593 1.19456 1.31741 1.20466 0.88608 0.93264 1.51201 0.93731 1.19306 0.92856 0.86660 0.89067 1.20230 0.93190 0.94260 0.96452 1.21227 0.99711 0.94307 0.99584 1.21338 0.95787 1.01001 0.91638 1.21342 1.04248 0.90199 1.02401 1.17927 1.00869 0.88374 0.86956 1.91433 1.89509 1.69529 1.62603 1.21131 1.02392 1.01258 0.94480 1.24444 1.01265 0.97787 0.96373 1.23398 1.02212 0.93899 0.91124 1.64118 1.21988 1.36483 1.07259 0.92940 0.84534 0.81356 0.82337 0.86573 0.91957 0.88384 0.91097 0.88112 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 15 2 C 0.02 1.18 5.47 84.65 0.46 1.64 15 3 Si 1.05 54.20 24.43 68.60 1.68 55.87 15 4 H -0.30 -14.79 7.05 99.48 0.70 -14.09 15 5 H -0.27 -12.70 4.53 99.48 0.45 -12.25 15 6 H -0.38 -20.87 7.11 99.48 0.71 -20.16 15 7 C -0.50 -27.54 8.97 25.60 0.23 -27.31 15 8 H 0.04 2.73 8.06 -2.91 -0.02 2.71 15 9 C 0.21 9.00 0.94 2.14 0.00 9.00 15 10 C -0.04 -1.53 4.77 -19.87 -0.09 -1.62 15 11 C -0.13 -4.03 9.22 22.28 0.21 -3.83 15 12 C -0.08 -1.98 10.04 22.26 0.22 -1.76 15 13 C -0.16 -4.35 10.03 22.31 0.22 -4.13 15 14 C 0.08 2.63 7.30 22.38 0.16 2.80 15 15 F -0.15 -5.19 17.27 44.97 0.78 -4.42 15 16 C -0.17 -6.74 9.16 22.31 0.20 -6.54 15 17 C -0.16 -5.48 6.65 31.24 0.21 -5.27 15 18 C 0.02 0.79 8.03 86.40 0.69 1.48 15 19 N -0.67 -26.55 2.24 -489.13 -1.09 -27.65 15 20 H 0.26 16.04 8.31 -92.71 -0.77 15.27 15 21 H 0.14 3.86 7.68 -2.91 -0.02 3.84 15 22 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 23 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 24 H 0.12 4.95 6.07 -2.91 -0.02 4.93 15 25 H 0.06 2.23 8.09 -2.39 -0.02 2.21 15 26 H 0.10 2.68 7.98 -2.39 -0.02 2.67 15 27 H 0.07 2.90 8.00 -2.39 -0.02 2.88 15 28 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 29 H 0.35 11.83 8.27 -89.70 -0.74 11.09 15 Total: -1.00 -68.45 243.87 4.34 -64.11 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.16 Total: 7.63 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 2.52 Total: -35.54 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -0.79 Total: -87.65 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 1.68 Total: 55.87 kcal Total: -68.45 4.34 -64.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668108.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds