Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48509 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47359 * 119.99603 * 3 2 1 6 6 H 1.48500 * 109.47496 * 239.99595 * 3 2 1 7 7 C 1.37879 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 173.83714 * 7 2 1 9 9 C 1.50699 * 120.00014 * 353.83907 * 7 2 1 10 10 C 1.50703 * 112.74651 * 286.33292 * 9 7 2 11 11 C 1.38264 * 119.98515 * 85.08768 * 10 9 7 12 12 C 1.38230 * 120.04791 * 179.72682 * 11 10 9 13 13 C 1.38225 * 120.02235 * 0.54521 * 12 11 10 14 14 C 1.38439 * 119.97642 * 359.72793 * 13 12 11 15 15 F 1.35096 * 120.02672 * 180.02562 * 14 13 12 16 16 C 1.38177 * 119.98479 * 265.36266 * 10 9 7 17 17 C 1.53512 * 113.47606 * 57.18248 * 9 7 2 18 18 C 1.53507 * 83.57968 * 88.74190 * 17 9 7 19 19 N 1.47480 * 87.93023 * 26.02376 * 18 17 9 20 20 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.97987 * 359.97397 * 11 10 9 22 22 H 1.07993 * 119.98597 * 180.27316 * 12 11 10 23 23 H 1.08002 * 120.01035 * 179.70123 * 13 12 11 24 24 H 1.08005 * 120.01293 * 0.02562 * 16 10 9 25 25 H 1.09008 * 114.17255 * 202.39263 * 17 9 7 26 26 H 1.09003 * 114.17345 * 335.08886 * 17 9 7 27 27 H 1.09000 * 113.47717 * 271.26105 * 18 17 9 28 28 H 1.08996 * 113.48318 * 140.79033 * 18 17 9 29 29 H 1.00898 * 111.00390 * 221.29853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1968 -0.0999 9 6 1.2575 -2.4953 0.1412 10 6 0.7551 -2.7303 1.5424 11 6 -0.4544 -2.1927 1.9421 12 6 -0.9191 -2.4121 3.2254 13 6 -0.1695 -3.1600 4.1139 14 6 1.0443 -3.6940 3.7165 15 9 1.7774 -4.4256 4.5839 16 6 1.5062 -3.4782 2.4290 17 6 0.1854 -2.7047 -0.9374 18 6 1.3432 -3.3392 -1.7207 19 7 1.9777 -3.6505 -0.4263 20 1 -0.4850 0.8401 -0.0004 21 1 -1.0384 -1.6042 1.2501 22 1 -1.8660 -1.9954 3.5351 23 1 -0.5306 -3.3273 5.1180 24 1 2.4532 -3.8940 2.1179 25 1 -0.6002 -3.4060 -0.6558 26 1 -0.1953 -1.7811 -1.3736 27 1 1.9064 -2.6232 -2.3192 28 1 1.0517 -4.2247 -2.2855 29 1 2.9710 -3.4766 -0.4593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668127.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = 10.013705 kcal Electronic energy + Delta-G solvation = -14990.236070 eV Core-core repulsion = 12407.575220 eV Total energy + Delta-G solvation = -2582.660849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.18172 -39.22983 -37.13296 -32.60747 -30.40819 -29.48403 -26.41143 -26.28000 -23.56948 -21.60204 -21.01610 -18.62837 -17.05654 -16.31652 -15.43077 -15.10241 -14.95407 -14.85459 -14.30084 -14.01083 -13.13486 -12.76017 -12.41694 -11.82112 -11.53885 -11.25601 -11.07592 -10.94656 -10.68692 -10.53593 -10.20229 -10.06653 -9.59849 -9.43056 -8.60987 -8.02515 -7.92758 -7.61248 -6.24487 -4.38786 2.13060 2.18491 3.18241 3.23638 3.27199 4.21414 4.61375 4.99244 5.06506 5.39359 5.56816 5.69263 5.98912 6.14663 6.25190 6.28238 6.43914 6.49031 6.78871 6.83279 6.87841 6.93680 7.20131 7.21124 7.36123 7.46916 7.66127 7.77875 7.91909 7.96638 8.39465 8.70414 9.28656 10.75024 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.011643 C = 0.010002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.606089 B = 2404.338969 C = 2798.903133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.079 3.921 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.229 3.771 10 C 0.012 3.988 11 C -0.104 4.104 12 C -0.111 4.111 13 C -0.184 4.184 14 C 0.073 3.927 15 F -0.157 7.157 16 C -0.148 4.148 17 C -0.127 4.127 18 C 0.011 3.989 19 N -0.642 5.642 20 H 0.267 0.733 21 H 0.152 0.848 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -2.676 1.717 3.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.138 3.862 10 C 0.011 3.989 11 C -0.122 4.122 12 C -0.130 4.130 13 C -0.203 4.203 14 C 0.054 3.946 15 F -0.136 7.136 16 C -0.167 4.167 17 C -0.165 4.165 18 C -0.119 4.119 19 N -0.266 5.266 20 H 0.077 0.923 21 H 0.169 0.831 22 H 0.135 0.865 23 H 0.134 0.866 24 H 0.140 0.860 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.606 -3.328 2.055 4.229 hybrid contribution 1.135 1.691 0.032 2.037 sum -0.471 -1.638 2.087 2.694 Atomic orbital electron populations 1.69798 1.05877 1.27216 1.47682 1.24878 0.94939 0.99161 0.93643 0.86580 0.79745 0.82502 0.78833 1.20942 1.20058 1.20121 1.21092 0.93352 0.89769 1.52563 0.91794 1.18961 0.91849 0.88211 0.87167 1.20147 0.91745 0.90163 0.96841 1.21566 0.96708 0.98044 0.95907 1.20942 0.99286 0.98631 0.94113 1.20811 0.95253 1.03697 1.00501 1.17705 0.91747 0.96921 0.88261 1.91395 1.77085 1.75706 1.69390 1.20892 1.01699 1.02527 0.91560 1.23092 0.95310 1.00137 0.97939 1.23207 0.97863 0.97873 0.93000 1.67395 1.08528 1.40251 1.10391 0.92339 0.83088 0.86520 0.86560 0.85954 0.92582 0.88689 0.92339 0.92640 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.60 9.09 55.43 0.50 -21.09 15 2 C 0.08 1.97 5.29 -17.82 -0.09 1.87 15 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.53 -13.27 7.82 -34.44 -0.27 -13.54 15 8 H 0.06 1.61 7.76 -52.49 -0.41 1.20 15 9 C 0.23 5.33 0.81 -137.62 -0.11 5.22 15 10 C 0.01 0.29 4.91 -104.63 -0.51 -0.23 15 11 C -0.10 -2.28 8.67 -39.57 -0.34 -2.62 15 12 C -0.11 -2.13 10.04 -39.59 -0.40 -2.53 15 13 C -0.18 -3.45 10.03 -39.51 -0.40 -3.85 15 14 C 0.07 1.49 7.30 -39.42 -0.29 1.20 15 15 F -0.16 -3.09 17.27 2.25 0.04 -3.05 15 16 C -0.15 -3.24 9.41 -39.51 -0.37 -3.61 15 17 C -0.13 -2.81 6.37 -26.20 -0.17 -2.98 15 18 C 0.01 0.23 8.28 -7.54 -0.06 0.16 15 19 N -0.64 -13.71 7.82 -110.91 -0.87 -14.58 15 20 H 0.27 6.39 8.31 -40.82 -0.34 6.05 15 21 H 0.15 3.47 6.07 -52.49 -0.32 3.16 15 22 H 0.12 1.88 8.06 -52.49 -0.42 1.46 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.12 2.62 7.77 -52.48 -0.41 2.22 15 25 H 0.06 1.21 8.11 -51.92 -0.42 0.79 15 26 H 0.09 2.26 6.45 -51.93 -0.34 1.93 15 27 H 0.06 1.19 7.99 -51.93 -0.41 0.77 15 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.31 6.27 8.50 -39.29 -0.33 5.94 15 LS Contribution 249.19 15.07 3.76 3.76 Total: -1.00 -25.20 249.19 -7.65 -32.85 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.04 Total: 8.22 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.02 Total: -20.90 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.36 Total: -35.67 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -25.20 -7.65 -32.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668127.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.864 kcal (2) G-P(sol) polarization free energy of solvation -25.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds