Wall clock time and date at job start Mon Mar 30 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48509 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47359 * 119.99603 * 3 2 1 6 6 H 1.48500 * 109.47496 * 239.99595 * 3 2 1 7 7 C 1.37879 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 173.83714 * 7 2 1 9 9 C 1.50699 * 120.00014 * 353.83907 * 7 2 1 10 10 C 1.50703 * 112.74651 * 286.33292 * 9 7 2 11 11 C 1.38264 * 119.98515 * 85.08768 * 10 9 7 12 12 C 1.38230 * 120.04791 * 179.72682 * 11 10 9 13 13 C 1.38225 * 120.02235 * 0.54521 * 12 11 10 14 14 C 1.38439 * 119.97642 * 359.72793 * 13 12 11 15 15 F 1.35096 * 120.02672 * 180.02562 * 14 13 12 16 16 C 1.38177 * 119.98479 * 265.36266 * 10 9 7 17 17 C 1.53512 * 113.47606 * 57.18248 * 9 7 2 18 18 C 1.53507 * 83.57968 * 88.74190 * 17 9 7 19 19 N 1.47480 * 87.93023 * 26.02376 * 18 17 9 20 20 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.97987 * 359.97397 * 11 10 9 22 22 H 1.07993 * 119.98597 * 180.27316 * 12 11 10 23 23 H 1.08002 * 120.01035 * 179.70123 * 13 12 11 24 24 H 1.08005 * 120.01293 * 0.02562 * 16 10 9 25 25 H 1.09008 * 114.17255 * 202.39263 * 17 9 7 26 26 H 1.09003 * 114.17345 * 335.08886 * 17 9 7 27 27 H 1.09000 * 113.47717 * 271.26105 * 18 17 9 28 28 H 1.08996 * 113.48318 * 140.79033 * 18 17 9 29 29 H 1.00898 * 111.00390 * 221.29853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1968 -0.0999 9 6 1.2575 -2.4953 0.1412 10 6 0.7551 -2.7303 1.5424 11 6 -0.4544 -2.1927 1.9421 12 6 -0.9191 -2.4121 3.2254 13 6 -0.1695 -3.1600 4.1139 14 6 1.0443 -3.6940 3.7165 15 9 1.7774 -4.4256 4.5839 16 6 1.5062 -3.4782 2.4290 17 6 0.1854 -2.7047 -0.9374 18 6 1.3432 -3.3392 -1.7207 19 7 1.9777 -3.6505 -0.4263 20 1 -0.4850 0.8401 -0.0004 21 1 -1.0384 -1.6042 1.2501 22 1 -1.8660 -1.9954 3.5351 23 1 -0.5306 -3.3273 5.1180 24 1 2.4532 -3.8940 2.1179 25 1 -0.6002 -3.4060 -0.6558 26 1 -0.1953 -1.7811 -1.3736 27 1 1.9064 -2.6232 -2.3192 28 1 1.0517 -4.2247 -2.2855 29 1 2.9710 -3.4766 -0.4593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668127.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:47 Heat of formation + Delta-G solvation = -4.385311 kcal Electronic energy + Delta-G solvation = -14990.860458 eV Core-core repulsion = 12407.575220 eV Total energy + Delta-G solvation = -2583.285238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.75621 -40.92399 -38.75630 -34.47652 -32.02064 -31.10644 -28.21379 -28.02885 -25.29656 -23.20939 -22.64209 -20.40064 -18.78335 -17.98464 -17.11634 -16.74129 -16.70322 -16.44154 -16.05847 -15.63874 -14.71923 -14.41354 -14.10351 -13.53056 -13.23798 -12.96936 -12.83211 -12.66032 -12.39365 -12.18324 -11.95429 -11.83329 -11.31252 -11.17010 -10.46129 -9.69585 -9.59545 -9.26115 -8.10625 -6.30819 0.49861 0.59884 1.41446 1.44819 1.49742 2.38731 2.96437 3.13339 3.46289 3.71087 4.06283 4.15752 4.27478 4.50581 4.65073 4.70625 4.78194 4.88196 5.11197 5.12366 5.26315 5.34641 5.47338 5.54350 5.63018 5.68018 5.82546 6.11248 6.16118 6.28215 6.59022 6.88613 7.37403 8.86237 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.011643 C = 0.010002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.606089 B = 2404.338969 C = 2798.903133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.045 3.955 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.221 3.779 10 C -0.011 4.011 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.173 4.173 14 C 0.067 3.933 15 F -0.153 7.153 16 C -0.163 4.163 17 C -0.124 4.124 18 C 0.020 3.980 19 N -0.641 5.641 20 H 0.267 0.733 21 H 0.137 0.863 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.117 0.883 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -2.738 2.610 4.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.129 3.871 10 C -0.012 4.012 11 C -0.140 4.140 12 C -0.121 4.121 13 C -0.192 4.192 14 C 0.048 3.952 15 F -0.132 7.132 16 C -0.182 4.182 17 C -0.162 4.162 18 C -0.111 4.111 19 N -0.265 5.265 20 H 0.077 0.923 21 H 0.154 0.846 22 H 0.169 0.831 23 H 0.170 0.830 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.077 -3.399 2.941 4.952 hybrid contribution 1.262 1.675 -0.208 2.107 sum -0.816 -1.724 2.733 3.333 Atomic orbital electron populations 1.69888 1.06355 1.27565 1.47607 1.25406 0.95680 1.01222 0.93616 0.85808 0.78705 0.79914 0.78331 1.20457 1.20834 1.19874 1.21251 0.93070 0.91077 1.53203 0.92812 1.18966 0.92176 0.87998 0.87911 1.20205 0.92697 0.91445 0.96897 1.21560 0.96604 0.98636 0.97184 1.21277 1.00356 0.97656 0.92776 1.21179 0.94033 1.02015 1.01935 1.17838 0.92458 0.97070 0.87859 1.91404 1.77132 1.75594 1.69041 1.20910 1.01729 1.03156 0.92443 1.22969 0.95634 0.99412 0.98187 1.23183 0.96589 0.98598 0.92684 1.67393 1.08701 1.39527 1.10842 0.92346 0.84573 0.83088 0.82969 0.86446 0.92506 0.90644 0.92618 0.90228 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.68 9.09 21.45 0.19 -43.49 15 2 C 0.04 2.23 5.29 84.66 0.45 2.68 15 3 Si 0.95 40.57 29.54 68.60 2.03 42.60 15 4 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 7 C -0.55 -27.66 7.82 25.60 0.20 -27.46 15 8 H 0.05 2.74 7.76 -2.91 -0.02 2.72 15 9 C 0.22 10.31 0.81 -0.69 0.00 10.31 15 10 C -0.01 -0.51 4.91 -19.87 -0.10 -0.60 15 11 C -0.12 -5.22 8.67 22.27 0.19 -5.03 15 12 C -0.10 -3.66 10.04 22.26 0.22 -3.43 15 13 C -0.17 -5.95 10.03 22.31 0.22 -5.73 15 14 C 0.07 2.61 7.30 22.38 0.16 2.78 15 15 F -0.15 -5.72 17.27 44.97 0.78 -4.94 15 16 C -0.16 -7.09 9.41 22.31 0.21 -6.88 15 17 C -0.12 -5.51 6.37 30.94 0.20 -5.31 15 18 C 0.02 0.79 8.28 83.58 0.69 1.48 15 19 N -0.64 -27.24 7.82 -504.80 -3.95 -31.18 15 20 H 0.27 12.75 8.31 -92.71 -0.77 11.98 15 21 H 0.14 6.26 6.07 -2.91 -0.02 6.25 15 22 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 23 H 0.15 4.14 8.06 -2.91 -0.02 4.11 15 24 H 0.12 5.07 7.77 -2.91 -0.02 5.05 15 25 H 0.06 2.47 8.11 -2.38 -0.02 2.45 15 26 H 0.08 3.64 6.45 -2.39 -0.02 3.62 15 27 H 0.06 2.24 7.99 -2.39 -0.02 2.22 15 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 29 H 0.31 12.66 8.50 -89.70 -0.76 11.90 15 Total: -1.00 -52.28 249.19 1.91 -50.37 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.40 Total: 23.85 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 2.45 Total: -37.20 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -3.75 Total: -74.67 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -52.28 1.91 -50.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668127.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.982 kcal (2) G-P(sol) polarization free energy of solvation -52.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds