Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48504 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47450 * 300.00573 * 3 2 1 6 6 H 1.48501 * 109.46898 * 60.00337 * 3 2 1 7 7 C 1.37875 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.50696 * 112.74450 * 309.66790 * 9 7 2 11 11 C 1.38248 * 119.97128 * 81.26487 * 10 9 7 12 12 C 1.38196 * 120.02483 * 179.97438 * 11 10 9 13 13 C 1.38458 * 119.97492 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.02786 * 179.97438 * 13 12 11 15 15 C 1.38465 * 119.94675 * 0.24873 * 13 12 11 16 16 C 1.38197 * 119.97511 * 359.47283 * 15 13 12 17 17 C 1.53509 * 113.53113 * 178.84671 * 9 7 2 18 18 C 1.53515 * 83.57799 * 271.25199 * 17 9 7 19 19 N 1.47483 * 87.92990 * 333.97585 * 18 17 9 20 20 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.98881 * 0.02562 * 11 10 9 22 22 H 1.07995 * 120.01604 * 180.02562 * 12 11 10 23 23 H 1.08007 * 120.01064 * 179.75151 * 15 13 12 24 24 H 1.07994 * 119.98821 * 180.29814 * 16 15 13 25 25 H 1.09003 * 114.16906 * 24.89781 * 17 9 7 26 26 H 1.08993 * 114.17242 * 157.60261 * 17 9 7 27 27 H 1.08992 * 113.47516 * 219.21201 * 18 17 9 28 28 H 1.08994 * 113.53123 * 88.74744 * 18 17 9 29 29 H 1.00898 * 111.00268 * 138.70354 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.1918 -2.5604 1.0697 11 6 -1.0380 -1.9650 0.8591 12 6 -2.0103 -2.0210 1.8395 13 6 -1.7523 -2.6732 3.0333 14 9 -2.7019 -2.7280 3.9927 15 6 -0.5182 -3.2642 3.2453 16 6 0.4506 -3.2120 2.2611 17 6 2.1631 -3.7336 -0.0295 18 6 2.0607 -3.5600 -1.5514 19 7 0.7622 -2.8953 -1.3344 20 1 -0.4850 0.8400 0.0004 21 1 -1.2393 -1.4567 -0.0724 22 1 -2.9711 -1.5562 1.6747 23 1 -0.3144 -3.7698 4.1777 24 1 1.4115 -3.6770 2.4244 25 1 3.1611 -3.5605 0.3733 26 1 1.6958 -4.6428 0.3484 27 1 1.9808 -4.5033 -2.0915 28 1 2.8224 -2.8999 -1.9663 29 1 0.6622 -2.0917 -1.9363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260672624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = 16.865071 kcal Electronic energy + Delta-G solvation = -15031.690126 eV Core-core repulsion = 12449.326374 eV Total energy + Delta-G solvation = -2582.363752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.05164 -39.21990 -36.94652 -32.77071 -30.06587 -29.51306 -26.51616 -26.25105 -23.27848 -21.75877 -20.83842 -18.68461 -16.89187 -16.71848 -15.40959 -15.19040 -14.74282 -14.63278 -14.41203 -13.46586 -12.81082 -12.66445 -12.31811 -12.07190 -11.69851 -11.32181 -11.07341 -10.99114 -10.75549 -10.50701 -10.22865 -10.09348 -9.61294 -9.16042 -8.86653 -7.99791 -7.70220 -7.39828 -6.05002 -4.50664 2.30389 2.46161 3.13127 3.22968 3.25059 4.17134 4.84963 4.93298 5.23999 5.45266 5.62386 5.78558 5.86650 6.00313 6.28222 6.41023 6.41705 6.61394 6.65085 6.82061 6.86652 7.08554 7.14248 7.24004 7.41826 7.49675 7.76959 7.85188 8.01417 8.16018 8.52534 8.69350 9.22920 10.65750 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.012404 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.758476 B = 2256.859390 C = 2931.789458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.230 3.770 10 C -0.030 4.030 11 C 0.003 3.997 12 C -0.191 4.191 13 C 0.065 3.935 14 F -0.162 7.162 15 C -0.186 4.186 16 C -0.102 4.102 17 C -0.150 4.150 18 C 0.012 3.988 19 N -0.637 5.637 20 H 0.266 0.734 21 H 0.165 0.835 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -3.330 0.709 3.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.141 3.859 10 C -0.032 4.032 11 C -0.017 4.017 12 C -0.211 4.211 13 C 0.046 3.954 14 F -0.141 7.141 15 C -0.205 4.205 16 C -0.121 4.121 17 C -0.188 4.188 18 C -0.119 4.119 19 N -0.261 5.261 20 H 0.078 0.922 21 H 0.182 0.818 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.253 -3.801 0.806 3.894 hybrid contribution 0.973 1.816 0.318 2.085 sum 0.720 -1.985 1.124 2.392 Atomic orbital electron populations 1.69752 1.05653 1.26208 1.48960 1.25108 0.95013 0.99619 0.93373 0.86389 0.80039 0.82901 0.77890 1.19649 1.20680 1.20696 1.21300 0.93304 0.89495 1.51926 0.91477 1.18855 0.88479 0.91873 0.86717 1.19784 0.94658 0.94070 0.94666 1.21600 0.90308 0.89626 1.00190 1.21115 1.01138 1.04496 0.94308 1.17707 0.86838 1.03623 0.87240 1.91370 1.64060 1.95381 1.63322 1.20675 0.93421 1.05842 1.00601 1.20675 0.97919 1.00120 0.93372 1.23326 0.99893 0.99293 0.96267 1.23097 0.93938 0.98509 0.96347 1.67444 1.26900 1.25446 1.06354 0.92243 0.81778 0.86909 0.86878 0.86815 0.92172 0.91033 0.92442 0.92645 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.64 8.37 55.43 0.46 -21.18 15 2 C 0.07 1.78 5.33 -17.82 -0.09 1.69 15 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -12.85 7.86 -34.44 -0.27 -13.12 15 8 H 0.07 1.66 7.81 -52.48 -0.41 1.25 15 9 C 0.23 5.25 0.93 -137.62 -0.13 5.12 15 10 C -0.03 -0.70 4.71 -104.62 -0.49 -1.20 15 11 C 0.00 0.06 7.21 -39.59 -0.29 -0.23 15 12 C -0.19 -4.14 10.03 -39.52 -0.40 -4.53 15 13 C 0.06 1.37 7.30 -39.42 -0.29 1.08 15 14 F -0.16 -3.28 17.27 2.25 0.04 -3.24 15 15 C -0.19 -3.77 10.03 -39.51 -0.40 -4.17 15 16 C -0.10 -2.17 9.07 -39.59 -0.36 -2.53 15 17 C -0.15 -2.97 6.52 -26.20 -0.17 -3.15 15 18 C 0.01 0.23 8.28 -7.54 -0.06 0.17 15 19 N -0.64 -13.92 8.25 -110.89 -0.91 -14.84 15 20 H 0.27 6.42 8.31 -40.82 -0.34 6.08 15 21 H 0.17 4.01 6.01 -52.49 -0.32 3.69 15 22 H 0.11 2.22 8.06 -52.49 -0.42 1.80 15 23 H 0.11 1.98 8.06 -52.48 -0.42 1.56 15 24 H 0.11 2.19 7.24 -52.49 -0.38 1.81 15 25 H 0.06 1.14 8.10 -51.93 -0.42 0.72 15 26 H 0.07 1.36 7.74 -51.93 -0.40 0.96 15 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 28 H 0.06 1.06 7.99 -51.93 -0.41 0.64 15 29 H 0.32 7.25 8.54 -39.29 -0.34 6.91 15 LS Contribution 248.02 15.07 3.74 3.74 Total: -1.00 -25.12 248.02 -7.72 -32.85 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.08 Total: 8.90 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.94 Total: -20.86 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.45 Total: -36.01 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.12 -7.72 -32.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.712 kcal (2) G-P(sol) polarization free energy of solvation -25.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds