Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48504 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47450 * 300.00573 * 3 2 1 6 6 H 1.48501 * 109.46898 * 60.00337 * 3 2 1 7 7 C 1.37875 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.50696 * 112.74450 * 309.66790 * 9 7 2 11 11 C 1.38248 * 119.97128 * 81.26487 * 10 9 7 12 12 C 1.38196 * 120.02483 * 179.97438 * 11 10 9 13 13 C 1.38458 * 119.97492 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.02786 * 179.97438 * 13 12 11 15 15 C 1.38465 * 119.94675 * 0.24873 * 13 12 11 16 16 C 1.38197 * 119.97511 * 359.47283 * 15 13 12 17 17 C 1.53509 * 113.53113 * 178.84671 * 9 7 2 18 18 C 1.53515 * 83.57799 * 271.25199 * 17 9 7 19 19 N 1.47483 * 87.92990 * 333.97585 * 18 17 9 20 20 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.98881 * 0.02562 * 11 10 9 22 22 H 1.07995 * 120.01604 * 180.02562 * 12 11 10 23 23 H 1.08007 * 120.01064 * 179.75151 * 15 13 12 24 24 H 1.07994 * 119.98821 * 180.29814 * 16 15 13 25 25 H 1.09003 * 114.16906 * 24.89781 * 17 9 7 26 26 H 1.08993 * 114.17242 * 157.60261 * 17 9 7 27 27 H 1.08992 * 113.47516 * 219.21201 * 18 17 9 28 28 H 1.08994 * 113.53123 * 88.74744 * 18 17 9 29 29 H 1.00898 * 111.00268 * 138.70354 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.1918 -2.5604 1.0697 11 6 -1.0380 -1.9650 0.8591 12 6 -2.0103 -2.0210 1.8395 13 6 -1.7523 -2.6732 3.0333 14 9 -2.7019 -2.7280 3.9927 15 6 -0.5182 -3.2642 3.2453 16 6 0.4506 -3.2120 2.2611 17 6 2.1631 -3.7336 -0.0295 18 6 2.0607 -3.5600 -1.5514 19 7 0.7622 -2.8953 -1.3344 20 1 -0.4850 0.8400 0.0004 21 1 -1.2393 -1.4567 -0.0724 22 1 -2.9711 -1.5562 1.6747 23 1 -0.3144 -3.7698 4.1777 24 1 1.4115 -3.6770 2.4244 25 1 3.1611 -3.5605 0.3733 26 1 1.6958 -4.6428 0.3484 27 1 1.9808 -4.5033 -2.0915 28 1 2.8224 -2.8999 -1.9663 29 1 0.6622 -2.0917 -1.9363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260672624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = 2.488369 kcal Electronic energy + Delta-G solvation = -15032.313546 eV Core-core repulsion = 12449.326374 eV Total energy + Delta-G solvation = -2582.987172 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.67640 -40.87946 -38.59595 -34.60278 -31.73319 -31.18960 -28.23874 -27.95657 -24.97349 -23.42017 -22.47408 -20.39579 -18.61496 -18.37271 -17.11763 -16.84172 -16.39399 -16.35801 -16.08928 -15.10772 -14.48657 -14.34802 -13.99530 -13.71504 -13.38234 -13.05048 -12.81971 -12.61024 -12.44427 -12.24674 -11.85922 -11.80139 -11.27591 -10.84951 -10.66866 -9.67438 -9.39150 -9.11135 -7.86975 -6.39542 0.61408 0.79678 1.39040 1.44698 1.52112 2.36957 3.06532 3.15691 3.59127 3.83808 4.01616 4.22568 4.25198 4.41890 4.68794 4.79302 4.87728 4.97495 5.09467 5.23268 5.24856 5.44835 5.46850 5.54948 5.63201 5.79762 5.97491 6.10667 6.32370 6.41892 6.68358 6.93176 7.35153 8.79363 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.012404 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.758476 B = 2256.859390 C = 2931.789458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.288 1.288 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.216 3.784 10 C -0.052 4.052 11 C -0.013 4.013 12 C -0.198 4.198 13 C 0.058 3.942 14 F -0.157 7.157 15 C -0.179 4.179 16 C -0.107 4.107 17 C -0.141 4.141 18 C 0.017 3.983 19 N -0.644 5.644 20 H 0.264 0.736 21 H 0.147 0.853 22 H 0.125 0.875 23 H 0.144 0.856 24 H 0.133 0.867 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -4.003 1.342 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.127 3.873 10 C -0.053 4.053 11 C -0.033 4.033 12 C -0.217 4.217 13 C 0.039 3.961 14 F -0.136 7.136 15 C -0.198 4.198 16 C -0.125 4.125 17 C -0.179 4.179 18 C -0.114 4.114 19 N -0.268 5.268 20 H 0.074 0.926 21 H 0.165 0.835 22 H 0.143 0.857 23 H 0.162 0.838 24 H 0.151 0.849 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.340 -4.488 1.436 4.725 hybrid contribution 0.761 1.995 0.136 2.140 sum 1.101 -2.493 1.572 3.146 Atomic orbital electron populations 1.69923 1.06251 1.26332 1.49208 1.25668 0.95700 1.01809 0.93487 0.85599 0.79088 0.80105 0.77340 1.19487 1.20501 1.21474 1.21479 0.93122 0.90700 1.52056 0.92146 1.18951 0.89061 0.92301 0.87024 1.20025 0.94798 0.94827 0.95675 1.21466 0.91164 0.90564 1.00059 1.21255 1.01456 1.04604 0.94414 1.17811 0.87435 1.03723 0.87175 1.91382 1.63906 1.95341 1.62952 1.21000 0.92547 1.04841 1.01449 1.20920 0.98996 0.99795 0.92819 1.23284 0.99652 0.98292 0.96631 1.23141 0.92654 0.99140 0.96436 1.67467 1.28403 1.24942 1.05989 0.92573 0.83543 0.85731 0.83793 0.84871 0.91428 0.90049 0.90160 0.92690 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.16 8.37 21.45 0.18 -43.98 15 2 C 0.04 1.73 5.33 84.65 0.45 2.18 15 3 Si 0.95 40.27 29.54 68.60 2.03 42.29 15 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.29 -12.45 7.11 99.48 0.71 -11.75 15 7 C -0.53 -26.12 7.86 25.60 0.20 -25.92 15 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 15 9 C 0.22 9.69 0.93 -0.69 0.00 9.69 15 10 C -0.05 -2.36 4.71 -19.86 -0.09 -2.46 15 11 C -0.01 -0.58 7.21 22.26 0.16 -0.42 15 12 C -0.20 -8.44 10.03 22.31 0.22 -8.22 15 13 C 0.06 2.33 7.30 22.38 0.16 2.50 15 14 F -0.16 -6.02 17.27 44.97 0.78 -5.24 15 15 C -0.18 -6.81 10.03 22.31 0.22 -6.58 15 16 C -0.11 -4.31 9.07 22.26 0.20 -4.11 15 17 C -0.14 -5.31 6.52 30.94 0.20 -5.11 15 18 C 0.02 0.62 8.28 83.58 0.69 1.31 15 19 N -0.64 -27.82 8.25 -504.75 -4.16 -31.98 15 20 H 0.26 12.85 8.31 -92.71 -0.77 12.08 15 21 H 0.15 7.30 6.01 -2.91 -0.02 7.29 15 22 H 0.12 4.85 8.06 -2.91 -0.02 4.83 15 23 H 0.14 4.51 8.06 -2.91 -0.02 4.48 15 24 H 0.13 4.76 7.24 -2.91 -0.02 4.74 15 25 H 0.07 2.42 8.10 -2.39 -0.02 2.40 15 26 H 0.08 2.89 7.74 -2.39 -0.02 2.87 15 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 28 H 0.05 2.02 7.99 -2.39 -0.02 2.00 15 29 H 0.31 14.12 8.54 -89.70 -0.77 13.35 15 Total: -1.00 -51.38 248.02 1.64 -49.74 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.40 Total: 26.31 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 2.42 Total: -37.15 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -3.98 Total: -75.96 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -51.38 1.64 -49.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.225 kcal (2) G-P(sol) polarization free energy of solvation -51.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds